Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1261
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0109 - 5368342-5369592                                           33   0.31 
08_02_1172 + 24898290-24899141,24900864-24901328                       29   5.1  
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108...    29   5.1  
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358     28   6.7  
06_03_1112 - 27706813-27707175,27707225-27707299,27707515-277076...    28   6.7  
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    28   6.7  

>10_02_0109 - 5368342-5369592
          Length = 416

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 547 FLGTAMYTEDSSGSEVPCP-KFELCVNTCWRVFE 449
           +LG A+ T+DS G  V C  +FE+ + TC+ ++E
Sbjct: 179 YLGAALRTDDSDGGGVVCSFEFEIILVTCYNMWE 212


>08_02_1172 + 24898290-24899141,24900864-24901328
          Length = 438

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +3

Query: 3   HPQPPR--FHPSPVRGNHLAPFCPP 71
           H  PP   FHP PV   H AP  PP
Sbjct: 64  HQYPPAAFFHPPPVHQQHQAPPSPP 88


>07_03_0831 -
           21810002-21810319,21810423-21810573,21810660-21810897,
           21811011-21811221,21811336-21811559,21811696-21811806,
           21813265-21813636,21813810-21814782
          Length = 865

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -2

Query: 670 IMGSNVTGVQQPVPKDITVIY--FYFKINRIILFAIDRRLKYMFLGTAMYTEDSSGSEVP 497
           + G  + G   P+  D+++ +  F   + R +L        YM LG+  +    S   +P
Sbjct: 239 VYGFKLNGDPPPIAGDMSIAFTPFNSSLYRFVLRPNGVETCYMLLGSGDWELVWSQPTIP 298

Query: 496 CPKFELC 476
           C ++ LC
Sbjct: 299 CHRYNLC 305


>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
          Length = 717

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 496 CPKFELCVNTCWRVFEQNHRSTSLDISAITKLDYVDS 386
           C K    +  CW+V ++  R +    S +T  +Y DS
Sbjct: 165 CKKKNHFIEECWKVQDKEKRKSDGKASVVTSAEYSDS 201


>06_03_1112 -
           27706813-27707175,27707225-27707299,27707515-27707665,
           27707953-27708190,27708280-27708490,27708565-27708680,
           27708805-27708847,27709817-27709859,27709941-27710056
          Length = 451

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 496 CPKFELCVNTCWRVFEQNHRSTSLDISAITKLDYVDSC 383
           C  F  C  T W+ ++Q     ++D S +  +D  ++C
Sbjct: 322 CYNFGFCHPTTWKCYDQGCLEKAIDSSMVDDVDVDEAC 359


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 462 QHVFTHNSNFGHGTSLPLLSSVYIAVPRNMYL 557
           QH   H++++GHG S+ L+S +    P   YL
Sbjct: 397 QHAREHSAHWGHGDSVNLVSGIEDTNPSYPYL 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,958,168
Number of Sequences: 37544
Number of extensions: 414145
Number of successful extensions: 1045
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)