Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1261
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53618| Best HMM Match : DHquinase_I (HMM E-Value=6.1)               31   0.97 
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)            29   3.9  
SB_39510| Best HMM Match : VWA (HMM E-Value=0)                         28   9.1  
SB_20260| Best HMM Match : fn3 (HMM E-Value=0)                         28   9.1  
SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_53618| Best HMM Match : DHquinase_I (HMM E-Value=6.1)
          Length = 303

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 24/79 (30%), Positives = 39/79 (49%)
 Frame = -2

Query: 508 SEVPCPKFELCVNTCWRVFEQNHRSTSLDISAITKLDYVDSCCYRSGSGLFLIWLRSIKY 329
           S+V    FE    +    F   H  TSL+  AIT LD + S   ++ S   L  L ++ Y
Sbjct: 93  SDVAVALFESANASLAIQFGSYHNMTSLE-KAITSLDRIKSASTKNFS---LDGLFALPY 148

Query: 328 SRPQLLTLLLRHVSQRHQY 272
           S+   + L+++HV+   +Y
Sbjct: 149 SKTPTIVLIMKHVTAYTKY 167


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 3   HPQPPRFHPSPVRGNHLAPFCPPTSRPM 86
           HP  P +HP P     + P  PP S P+
Sbjct: 153 HPNTPYYHPKPADPAPMQPPAPPPSPPV 180


>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
          Length = 496

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 6   PQPPRFHPSPVRGNHLAPFCPPT 74
           P PPR+ PSP+R   + P  PP+
Sbjct: 259 PSPPRYPPSPLRYPPIPPRYPPS 281


>SB_39510| Best HMM Match : VWA (HMM E-Value=0)
          Length = 705

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 594 ILK*K*MTVISLGTGCCTP-VTFDPMMTPS 680
           +L+   +TVIS+G GCC+P  T + M + S
Sbjct: 631 VLRDSGVTVISVGVGCCSPKKTLEEMASSS 660


>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1428

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 60  FCPPTSRPMDVYYWNTNAGTIH 125
           +C PT +P+ V+ +NT++ +I+
Sbjct: 32  YCAPTGKPLSVHAYNTSSSSIN 53


>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 238 VFRFFKSLGLLHIGGADSRDVITMLII 318
           VF  F+++GL H+G  +S+  + +L++
Sbjct: 346 VFNLFRTMGLRHLGVTNSKGQVVVLVL 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,893,068
Number of Sequences: 59808
Number of extensions: 475626
Number of successful extensions: 974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)