Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1261
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p...    28   7.9  
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C...    28   7.9  
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A...    28   7.9  
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.     28   7.9  

>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 622 ITVIYFYFKI-NRIILFAIDRRLKYMFLGTAMYTEDSSGSEVPCPKFELCVNTCWRVFEQ 446
           +++++   K+  R I + I   LK     ++  T + + S + CPKFE C   C  +F  
Sbjct: 355 VSIVFQPLKLAGRNITYQIKYTLKDR--NSSQITNELTDSNLKCPKFE-CQWKCALIFNL 411

Query: 445 NHRSTSLDISAITKLDYV 392
            HR          K+D V
Sbjct: 412 PHRPREYKFEIRAKVDNV 429


>Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical
           protein W07A12.6 protein.
          Length = 477

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -2

Query: 445 NHRSTSLDISAITKLDYVDSCCYRSGSGLFLIWLRSIKYSRPQLLTLLLRHVSQRHQYV 269
           NH  + +D++ ITK     +   RS  GL+LI+ R      P L+ LLL + +   +Y+
Sbjct: 272 NH--SDVDVAFITKPGQDPAVLARSYEGLWLIYSRPYTKCGPFLIGLLLGYTTVSSKYI 328


>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
            T14G10.2a protein.
          Length = 1470

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 38   PRQSLSAILPTHIQAH 85
            PRQSLS ++PTH   H
Sbjct: 1340 PRQSLSVVIPTHPHGH 1355


>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
            protein T14G10.2a protein.
          Length = 1470

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 38   PRQSLSAILPTHIQAH 85
            PRQSLS ++PTH   H
Sbjct: 1340 PRQSLSVVIPTHPHGH 1355


>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
            protein.
          Length = 1347

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 38   PRQSLSAILPTHIQAH 85
            PRQSLS ++PTH   H
Sbjct: 1217 PRQSLSVVIPTHPHGH 1232


>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
            protein.
          Length = 1470

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 38   PRQSLSAILPTHIQAH 85
            PRQSLS ++PTH   H
Sbjct: 1340 PRQSLSVVIPTHPHGH 1355


>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
          Length = 1470

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 38   PRQSLSAILPTHIQAH 85
            PRQSLS ++PTH   H
Sbjct: 1340 PRQSLSVVIPTHPHGH 1355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,173,521
Number of Sequences: 27780
Number of extensions: 366006
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)