Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1261
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.74 
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   5.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.1  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 472 NTCWRVFEQNHRSTSLDISAITKLDYVDS 386
           N C +  EQ  R  SLD   I + D +DS
Sbjct: 115 NVCLKFEEQKRRKKSLDDVKILRNDRIDS 143


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 524 SVHCGSKKHVLKPPV 568
           S+ C  K+HV+KP +
Sbjct: 27  SIKCNCKRHVIKPHI 41


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 90  VYYWNTNAGTIHEK 131
           +Y W T +GTI EK
Sbjct: 548 IYIWFTTSGTISEK 561


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 90  VYYWNTNAGTIHEK 131
           +Y W T +GTI EK
Sbjct: 601 IYIWFTTSGTISEK 614


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 178 VQF-GKVCFIVNLNFKEYAK 234
           VQF GK  F+   NF+E+AK
Sbjct: 2   VQFEGKFQFVSQNNFEEFAK 21


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 382 CYRSGSGLFLI 350
           CY++G G FLI
Sbjct: 11  CYKNGGGAFLI 21


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 598 KINRIILFAIDRRLKYMFLGTAMYTE 521
           KINR + + I  R+    L T  YT+
Sbjct: 369 KINRGLXWIISDRMPVFLLXTLNYTD 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,521
Number of Sequences: 438
Number of extensions: 5077
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)