Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1261
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR ...    29   2.4  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   7.4  
At3g13330.1 68416.m01678 expressed protein                             28   7.4  
At5g38640.1 68418.m04673 eukaryotic translation initiation facto...    27   9.8  
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P...    27   9.8  
At1g76900.2 68414.m08950 F-box family protein / tubby family pro...    27   9.8  
At1g76900.1 68414.m08949 F-box family protein / tubby family pro...    27   9.8  

>At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 941

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 314 INIVITSRESAPPICNNPRDLKNLNTHFAYSLKFRFTIKQTLPNWTVL 171
           +N+  T  +S P      R L  LN  F+Y L+    I  TLPN  VL
Sbjct: 675 LNLSSTGIKSLPGGMKKLRKLIYLNLEFSYKLESLVGISATLPNLQVL 722


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   PQPPRFHPSPVRGNHLAPFCPPTSRPMDVYYWNT 107
           P PP  H +P      A + PP S P  VYY+N+
Sbjct: 759 PPPPTVHYNPPPPPSPAHYSPPPSPP--VYYYNS 790


>At3g13330.1 68416.m01678 expressed protein
          Length = 1711

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 441  WFCSKTRQHVFTHNSNFGHGTSLPLLSSVYIAVPRNMYLSLRSIANKMILFILK 602
            W  S++  H+F  + NF     L  L    + +  + Y ++R +A K ++ +LK
Sbjct: 884  WRSSQSSYHLFRTDGNFSPPEPLTFLVDDLLTLCLHNYETVRVLAGKSLIKLLK 937


>At5g38640.1 68418.m04673 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41111 Translation initiation factor eIF-2B delta
           subunit (eIF-2B GDP-GTP exchange factor) {Oryctolagus
           cuniculus}; contains Pfam profile PF01008: Initiation
           factor 2 subunit family
          Length = 642

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 354 KNNPEPER*QQEST*SSLVIAEISRDVLRWFCSKTRQHVFTHNSNFGHGTSLPLLSSVY 530
           K+ P P R Q +    S V+    R V++   +K R  +F H   + HGT LP L + +
Sbjct: 256 KDAPHP-RMQYDD--ESRVVKAKRRAVVKQTEAKNRVELFRHLPQYEHGTQLPDLETKF 311


>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family;similar
           to HMG I/Y like protein (GI:15706274) [Glycine
           max];similar to HMR1 protein (GI:4218141) [Antirrhinum
           majus]; similar to high mobility group protein
           (GI:1483173) [Canavalia gladiata]
          Length = 480

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 418 RYREMCYGGSVQKHASTCSHTIRILGT 498
           RY E CY G    HA+  +H ++ L T
Sbjct: 92  RYIERCYTGLTSAHAALLTHHLKTLKT 118


>At1g76900.2 68414.m08950 F-box family protein / tubby family
           protein similar to Tubby protein (SP:P50586) {Mus
           musculus}; similar to Chain A, C-Terminal Domain Of
           Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
           similar to Tubby related protein 1 (Tubby-like protein
           1) (Swiss-Prot:O00294) [Homo sapiens]; similar to
           phosphodiesterase (GI:467578) [Mus musculus]; contains
           Pfam profile: PF01167: Tub family; contains Pfam
           PF00646: F-box domain
          Length = 455

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 425 ERCATVVLFKNTPARVHTQFEFWARNF 505
           ER +  ++ KN P R H Q + W  NF
Sbjct: 341 ERNSPPLVLKNKPPRWHEQLQCWCLNF 367


>At1g76900.1 68414.m08949 F-box family protein / tubby family
           protein similar to Tubby protein (SP:P50586) {Mus
           musculus}; similar to Chain A, C-Terminal Domain Of
           Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
           similar to Tubby related protein 1 (Tubby-like protein
           1) (Swiss-Prot:O00294) [Homo sapiens]; similar to
           phosphodiesterase (GI:467578) [Mus musculus]; contains
           Pfam profile: PF01167: Tub family; contains Pfam
           PF00646: F-box domain
          Length = 455

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 425 ERCATVVLFKNTPARVHTQFEFWARNF 505
           ER +  ++ KN P R H Q + W  NF
Sbjct: 341 ERNSPPLVLKNKPPRWHEQLQCWCLNF 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,089,653
Number of Sequences: 28952
Number of extensions: 337481
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)