Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1258
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   4.0  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   7.0  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   7.0  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    25   9.2  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 634 TTNKTRKTVEVTSPTPVLFTGSEVTPVDIWR 542
           T+N+ RK+V V +PT    TGS  +P    R
Sbjct: 65  TSNEVRKSVPVGNPTVHTKTGSSSSPASKMR 95


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +3

Query: 3   KNCVSLFTKIARTEEYEISHTYREYREGVQNANIFLNYALKIH*INKENITHTTMYLTHT 182
           K+C S+   +     +E   +  E   GV    I L     ++ + K+NI++   +    
Sbjct: 188 KDCTSIQKLVVFENAFETLFSLLENEGGVDGGIIALEALKFLNVLLKDNISNQNYFRESN 247

Query: 183 HILYLIYKILVSQF 224
           HI  L+  + V  F
Sbjct: 248 HIPSLLKLLSVDTF 261


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 450 DQPLFFNSHFSNLIIFPLRSKLINRH 527
           D  LF  SHF+N ++  L S   N H
Sbjct: 321 DNHLFVGSHFNNSVLLQLPSITKNNH 346


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 288 YRISTKNFIKIVKPFRRSMATKTVTREFYILDI 190
           + +  KN + + KP + S+  KT     YIL I
Sbjct: 93  FALEPKNILVVTKPRKHSLVYKTAEITKYILTI 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,119
Number of Sequences: 5004
Number of extensions: 49473
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)