Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1258
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   2.4  
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  29   2.4  
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 27   9.7  
SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)                 27   9.7  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 27   9.7  
SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 134 NQ*RKHYTHYHVFDTHTHIISN--I*NSRVTVFVAILLRNGLTILM 265
           N    H+ HYH +  H H  +N  I  + +T+ + I + N +TI++
Sbjct: 232 NHHHHHHHHYHHYHHHHHHHNNNTIITTIITITIIITINNTITIII 277


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -2

Query: 288 YRISTKNFIKIVKPFRRSMATKTVTREFYILDIICVCVSN 169
           Y+++ + F K++KP   S+  + +   +YI D + +C S+
Sbjct: 338 YKLAPQVFTKVLKPVNASLRFRHIRVIYYIDDTLVICKSS 377


>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 107 KYISILYSFSIFPISVRNFILLRPRNFRK 21
           KY  ILY +S+FP    N +   PRNF K
Sbjct: 42  KYNGILYKYSVFP----NGLCTCPRNFTK 66


>SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)
          Length = 509

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 107 KYISILYSFSIFPISVRNFILLRPRNFRK 21
           KY  ILY +S+FP    N +   PRNF K
Sbjct: 166 KYNGILYKYSVFP----NGLCTCPRNFTK 190


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 107 KYISILYSFSIFPISVRNFILLRPRNFRK 21
           KY  ILY +S+FP    N +   PRNF K
Sbjct: 42  KYNGILYKYSVFP----NGLCTCPRNFTK 66


>SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 399 YDTTYKNTYNPQFSPFYDQPLFFNS 473
           Y   +KN+     SPF+D PLF NS
Sbjct: 253 YRIYFKNSDGQAVSPFHDIPLFANS 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,130,214
Number of Sequences: 59808
Number of extensions: 345298
Number of successful extensions: 886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)