BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1258 (640 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 2.4 SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 29 2.4 SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 27 9.7 SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06) 27 9.7 SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 27 9.7 SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 >SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) Length = 694 Score = 29.5 bits (63), Expect = 2.4 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +2 Query: 134 NQ*RKHYTHYHVFDTHTHIISN--I*NSRVTVFVAILLRNGLTILM 265 N H+ HYH + H H +N I + +T+ + I + N +TI++ Sbjct: 232 NHHHHHHHHYHHYHHHHHHHNNNTIITTIITITIIITINNTITIII 277 >SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) Length = 938 Score = 29.5 bits (63), Expect = 2.4 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = -2 Query: 288 YRISTKNFIKIVKPFRRSMATKTVTREFYILDIICVCVSN 169 Y+++ + F K++KP S+ + + +YI D + +C S+ Sbjct: 338 YKLAPQVFTKVLKPVNASLRFRHIRVIYYIDDTLVICKSS 377 >SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) Length = 515 Score = 27.5 bits (58), Expect = 9.7 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 107 KYISILYSFSIFPISVRNFILLRPRNFRK 21 KY ILY +S+FP N + PRNF K Sbjct: 42 KYNGILYKYSVFP----NGLCTCPRNFTK 66 >SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06) Length = 509 Score = 27.5 bits (58), Expect = 9.7 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 107 KYISILYSFSIFPISVRNFILLRPRNFRK 21 KY ILY +S+FP N + PRNF K Sbjct: 166 KYNGILYKYSVFP----NGLCTCPRNFTK 190 >SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) Length = 515 Score = 27.5 bits (58), Expect = 9.7 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 107 KYISILYSFSIFPISVRNFILLRPRNFRK 21 KY ILY +S+FP N + PRNF K Sbjct: 42 KYNGILYKYSVFP----NGLCTCPRNFTK 66 >SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 488 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 399 YDTTYKNTYNPQFSPFYDQPLFFNS 473 Y +KN+ SPF+D PLF NS Sbjct: 253 YRIYFKNSDGQAVSPFHDIPLFANS 277 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,130,214 Number of Sequences: 59808 Number of extensions: 345298 Number of successful extensions: 886 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 785 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 881 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1608851125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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