Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1258
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z50797-8|CAL36515.1|  291|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical...    28   4.9  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
            T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +3

Query: 450  DQPLFFNSHFSNLI------IFPLRSKLINRHLISYPRQMSTGVTSDPVNSTGVGDVTST 611
            DQ LF N+H  N        +FP R+ LI +      R+MSTG  ++P     + ++ S 
Sbjct: 1319 DQGLFPNNHTINEFQELHKEVFPTRNALILKIREVRQRRMSTGSEAEPSYKPTIENIISA 1378

Query: 612  VF 617
            ++
Sbjct: 1379 LY 1380


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
            protein T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +3

Query: 450  DQPLFFNSHFSNLI------IFPLRSKLINRHLISYPRQMSTGVTSDPVNSTGVGDVTST 611
            DQ LF N+H  N        +FP R+ LI +      R+MSTG  ++P     + ++ S 
Sbjct: 1319 DQGLFPNNHTINEFQELHKEVFPTRNALILKIREVRQRRMSTGSEAEPSYKPTIENIISA 1378

Query: 612  VF 617
            ++
Sbjct: 1379 LY 1380


>Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical
           protein T22H6.6b protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +3

Query: 450 DQPLFFNSHFSNLI------IFPLRSKLINRHLISYPRQMSTGVTSDPVNSTGVGDVTST 611
           DQ LF N+H  N        +FP R+ LI +      R+MSTG  ++P     + ++ S 
Sbjct: 554 DQGLFPNNHTINEFQELHKEVFPTRNALILKIREVRQRRMSTGSEAEPSYKPTIENIISA 613

Query: 612 VF 617
           ++
Sbjct: 614 LY 615


>Z50797-8|CAL36515.1|  291|Caenorhabditis elegans Hypothetical
           protein T22H6.6c protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +3

Query: 450 DQPLFFNSHFSNLI------IFPLRSKLINRHLISYPRQMSTGVTSDPVNSTGVGDVTST 611
           DQ LF N+H  N        +FP R+ LI +      R+MSTG  ++P     + ++ S 
Sbjct: 205 DQGLFPNNHTINEFQELHKEVFPTRNALILKIREVRQRRMSTGSEAEPSYKPTIENIISA 264

Query: 612 VF 617
           ++
Sbjct: 265 LY 266


>AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.7 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 24  TKIARTEEYEISHTYREYREGVQNANIFLNYALKIH*INKENITHTTMYLTHTHIL 191
           T +   ++ +I       +  V++  I L YA K+H  +      T MY T  H+L
Sbjct: 102 TSVVYKKQEKIFKKQNYVKVAVKDFGILLRYASKLHISSVHTCYKTDMYFTAKHLL 157


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 634 TTNKTRKTVEVTSPTPVLFTGSEVTP 557
           TT  T  T + T  TPV+ T S +TP
Sbjct: 695 TTTTTTTTTQTTPTTPVVTTPSTITP 720


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 634 TTNKTRKTVEVTSPTPVLFTGSEVTP 557
           TT  T  T + T  TPV+ T S +TP
Sbjct: 751 TTTTTTTTTQTTPTTPVVTTPSTITP 776


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 634 TTNKTRKTVEVTSPTPVLFTGSEVTP 557
           TT  T  T + T  TPV+ T S +TP
Sbjct: 574 TTTTTTTTTQTTPTTPVVTTPSTITP 599


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,879,428
Number of Sequences: 27780
Number of extensions: 268616
Number of successful extensions: 599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)