Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1257
         (616 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep: Lipo...    40   0.062
UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n...    36   1.0  

>UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep:
           Lipocalin-2 - Lonomia obliqua (Moth)
          Length = 53

 Score = 39.5 bits (88), Expect = 0.062
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +3

Query: 177 EGHARAAEAVVQHNTEAVRQAAEASR 254
           + HARA EA VQ+NT+A RQ AEA+R
Sbjct: 16  QDHARAVEAAVQYNTDATRQVAEANR 41


>UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n=1;
           Allochromatium vinosum|Rep: Sulfur globule protein CV1
           precursor - Chromatium vinosum (Allochromatium vinosum)
          Length = 127

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 392 APYGIAAPYGIAAPYTAYGA-YGVXP 466
           APYG  APYG  APY  YGA YG  P
Sbjct: 82  APYGYGAPYGYGAPY-GYGAPYGAMP 106



 Score = 33.9 bits (74), Expect = 3.1
 Identities = 18/34 (52%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 392 APYGIAAPYGIAAPYTAYGA-YGVXPTASAFTLG 490
           APYG  APYG  APY  YGA YG      A   G
Sbjct: 76  APYGYGAPYGYGAPY-GYGAPYGYGAPYGAMPYG 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,894,627
Number of Sequences: 1657284
Number of extensions: 4267139
Number of successful extensions: 13802
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13765
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)