BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1257 (616 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_07_0125 + 27861368-27862282 29 3.9 12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 28 5.1 10_08_0108 + 14860469-14861032 28 5.1 08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757 28 6.8 >05_07_0125 + 27861368-27862282 Length = 304 Score = 28.7 bits (61), Expect = 3.9 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -1 Query: 508 RGRDRFTKRERRGCRG--DXVSAVSGVGRGDSVRCGDAIGG 392 R RD F +RER G RG D G G GD R GD+ G Sbjct: 208 RDRDDF-RRERDGYRGGGDGYRGGGGGGGGDGYRGGDSYRG 247 >12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599, 1794701-1794747,1795760-1796291 Length = 292 Score = 28.3 bits (60), Expect = 5.1 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Frame = +2 Query: 380 PLVTAPYGIAAPYGIAAPYTAYGA-YGVXPTASA 478 P T PYG YG YGA YG P +SA Sbjct: 65 PPSTQPYGSGGGYGAPPSSQPYGAPYGAPPPSSA 98 >10_08_0108 + 14860469-14861032 Length = 187 Score = 28.3 bits (60), Expect = 5.1 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -1 Query: 517 NNGRG-RDRFTKRERRGCRGDXVSAVSGVGRGDSVRCGDAIGGSD 386 + GRG R + + RRG D V A GRG RC G SD Sbjct: 44 HGGRGCRSGYRRDRRRGGVDDGVPANPRAGRGGGRRCDVDEGDSD 88 >08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757 Length = 202 Score = 27.9 bits (59), Expect = 6.8 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 514 NGRGRDRFTKRERRGCRGDXVSAVSGVGRGD 422 +GRGR T+R RR R V+AV G G D Sbjct: 38 SGRGRGGCTRRWRRRTRMRAVAAVEGGGSDD 68 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,774,798 Number of Sequences: 37544 Number of extensions: 124054 Number of successful extensions: 478 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 473 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 478 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1478421500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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