Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1257
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0125 + 27861368-27862282                                         29   3.9  
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179...    28   5.1  
10_08_0108 + 14860469-14861032                                         28   5.1  
08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757           28   6.8  

>05_07_0125 + 27861368-27862282
          Length = 304

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 508 RGRDRFTKRERRGCRG--DXVSAVSGVGRGDSVRCGDAIGG 392
           R RD F +RER G RG  D      G G GD  R GD+  G
Sbjct: 208 RDRDDF-RRERDGYRGGGDGYRGGGGGGGGDGYRGGDSYRG 247


>12_01_0239 -
           1793612-1793716,1793808-1793826,1794424-1794599,
           1794701-1794747,1795760-1796291
          Length = 292

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 380 PLVTAPYGIAAPYGIAAPYTAYGA-YGVXPTASA 478
           P  T PYG    YG       YGA YG  P +SA
Sbjct: 65  PPSTQPYGSGGGYGAPPSSQPYGAPYGAPPPSSA 98


>10_08_0108 + 14860469-14861032
          Length = 187

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 517 NNGRG-RDRFTKRERRGCRGDXVSAVSGVGRGDSVRCGDAIGGSD 386
           + GRG R  + +  RRG   D V A    GRG   RC    G SD
Sbjct: 44  HGGRGCRSGYRRDRRRGGVDDGVPANPRAGRGGGRRCDVDEGDSD 88


>08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757
          Length = 202

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 514 NGRGRDRFTKRERRGCRGDXVSAVSGVGRGD 422
           +GRGR   T+R RR  R   V+AV G G  D
Sbjct: 38  SGRGRGGCTRRWRRRTRMRAVAAVEGGGSDD 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,774,798
Number of Sequences: 37544
Number of extensions: 124054
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)