Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1257
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  

>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 386 VTAPYGIAAPYGIAAPYTAYGAYGV 460
           +T PYGI  PY I  PY     Y +
Sbjct: 583 ITCPYGITYPYDITCPYNITCPYDI 607



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 386 VTAPYGIAAPYGIAAPYTAYGAYGV 460
           +T PYGI   YGI  PY     +G+
Sbjct: 619 ITCPYGITCLYGITCPYGITCQFGI 643



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 386 VTAPYGIAAPYGIAAPYTAYGAYG 457
           +T PY I  PY I  PY     YG
Sbjct: 463 ITCPYDITCPYDIKCPYDITCLYG 486



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 386 VTAPYGIAAPYGIAAPYTAYGAYGV 460
           +T PYGI   +GI  PY     Y +
Sbjct: 631 ITCPYGITCQFGITCPYDITCPYDI 655



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 386 VTAPYGIAAPYGIAAPYTAYGAYGV 460
           +T PY I  PY I  PY     YG+
Sbjct: 667 ITYPYDITYPYDITCPYYITCPYGI 691



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 386 VTAPYGIAAPYGIAAPYTAYGAYGV 460
           +T PY I  PY I  PY     YG+
Sbjct: 601 ITCPYDITWPYDITWPYDITCPYGI 625


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 392  APYGIAAPYGIAAPYTAYGAYGVXPTASAFTLGKPITT 505
            APY    PY I  PY     Y    T + ++ G+P  T
Sbjct: 1335 APYNTGEPYNIGVPYNTGAPYN---TGAPYSTGEPYRT 1369



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 395  PYGIAAPYGIAAPYTAYGAYGVXPTASAFTLGKPITT 505
            PY I  PY   APY     Y    T   +  G+P  T
Sbjct: 1342 PYNIGVPYNTGAPYNTGAPYS---TGEPYRTGEPYNT 1375



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
 Frame = +2

Query: 386  VTAPYGIAAPYGIAAPYTAYGAYGVXP---TASAFTLGKPITTAA 511
            +  PY   APY   APY+    Y       T   +  G+P  T A
Sbjct: 1345 IGVPYNTGAPYNTGAPYSTGEPYRTGEPYNTGEPYNTGEPYNTGA 1389



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
 Frame = +2

Query: 392  APYGIAAPYGIAAPYTAYGAYGVXP---TASAFTLGKPITT 505
            APY   APY    PY     Y       T   +  G+PI+T
Sbjct: 1389 APYSTGAPYSTGEPYRTGEPYNTGEPYNTGEPYNTGEPIST 1429


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,986
Number of Sequences: 59808
Number of extensions: 129512
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)