Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1256
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 141 7e-35
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 3e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 61 1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 57 2e-09
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 45 1e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 39 5e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 38 0.001
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 36 0.004
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.047
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.0
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 27 2.3
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.3
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 141 bits (342), Expect = 7e-35
Identities = 64/71 (90%), Positives = 68/71 (95%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXE 327
MYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEY E
Sbjct: 305 MYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 326 SGPSIVHRKCF 294
SGP IV+RKCF
Sbjct: 365 SGPGIVYRKCF 375
Score = 70.5 bits (165), Expect = 2e-13
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = -1
Query: 640 SLSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
+L P +LG++ GIHE TYNSI+KCDVDIRKDLY N V+SGGT
Sbjct: 260 ALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGT 303
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 3e-11
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = -3
Query: 497 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYXE 327
G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY E
Sbjct: 361 GFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419
Query: 326 SGP---SIVHRKC 297
G +++ ++C
Sbjct: 420 HGSDRLALIEKRC 432
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 634 SNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
S+ + + GI + N I +CDVDIR L N ++ GGT
Sbjct: 315 SSVTNTSSRILGIPQLFQNCISECDVDIRASLLNNVIVCGGT 356
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/68 (39%), Positives = 47/68 (69%)
Frame = -3
Query: 497 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXESGP 318
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 317 SIVHRKCF 294
+++ R+ F
Sbjct: 372 NVIFRRRF 379
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = -1
Query: 637 LSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
L NP +G +A G+H + SI+ D+D+R LY+N VLSGG+
Sbjct: 266 LFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGS 308
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQEY 333
+ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEY
Sbjct: 355 LIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEY 414
Query: 332 XESG 321
E G
Sbjct: 415 DEVG 418
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1
Query: 601 GIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
G+HE Y SI+ CD ++R L N V++GGT
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGT 353
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 12/74 (16%)
Frame = -3
Query: 506 MYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTF 363
MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++
Sbjct: 305 MYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQN 364
Query: 362 QQMWISKQEYXESG 321
MW+SK E+ E G
Sbjct: 365 DHMWVSKAEWEEYG 378
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -1
Query: 637 LSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
L P +G + G+ E +++I DVDIRK LY VLSGG+
Sbjct: 261 LFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGS 303
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 39.1 bits (87), Expect = 5e-04
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -3
Query: 500 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXESG 321
PG+ R+++E+T++ P I + W G S + F+ ++++EY E G
Sbjct: 648 PGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKG 707
Query: 320 PSIV 309
P +
Sbjct: 708 PEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = -3
Query: 503 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXES 324
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 323 GPSIVHRK 300
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 440 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXESGPSIVHR 303
+ +I+ ++ +VW GGS+LA F +K +Y E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 592 ETTYNSIIKCDVDIRKDLYANTVLSGGT 509
E N + +D+RK LY N VLSGG+
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGS 336
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.047
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -3
Query: 503 YPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEY 333
+PG A +++ I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 542 FPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDW 601
Query: 332 XESGPSIVHRK 300
G ++ K
Sbjct: 602 KMLGSRVLQYK 612
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -1
Query: 343 NKSTTSLAPPLYTGSASKRTARRCLQQPAAAAQFRLVISVNLIVRKI 203
N+S +SL+ Y+ SK+T+ L + A+ Q +++ I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 401 WIGGSILASLSTFQQM---WISKQEYXESGPSIVHRK 300
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 626 SFFGYESLRHPRDHI*LHHKVRRG 555
S +GY +L HPR+ I + ++ RG
Sbjct: 470 SLYGYSTLLHPRNPICVRQRIGRG 493
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 476 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 366
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 409 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 314
TP + PPS+PS++ R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 403 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 317
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 342 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 428
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 403 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 317
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,604
Number of Sequences: 5004
Number of extensions: 49155
Number of successful extensions: 144
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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