Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1256
(646 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 8e-36
SB_56| Best HMM Match : Actin (HMM E-Value=0) 147 8e-36
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 146 1e-35
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 1e-35
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 2e-35
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 3e-35
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 130 7e-31
SB_54| Best HMM Match : Actin (HMM E-Value=0) 47 2e-05
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 46 2e-05
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 42 3e-04
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 31 0.80
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 30 1.9
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10) 29 3.2
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13) 28 5.7
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 7.5
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_1465| Best HMM Match : PAN (HMM E-Value=0.012) 27 9.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 147 bits (356), Expect = 8e-36
Identities = 68/71 (95%), Positives = 69/71 (97%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXE 327
MYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY E
Sbjct: 306 MYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 365
Query: 326 SGPSIVHRKCF 294
SGPSIVHRKCF
Sbjct: 366 SGPSIVHRKCF 376
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/44 (75%), Positives = 39/44 (88%)
Frame = -1
Query: 640 SLSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
++ P LGM++ GIHETTYNSI+KCDVDIRKDLYANTVLSGG+
Sbjct: 261 AMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGS 304
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 147 bits (356), Expect = 8e-36
Identities = 68/71 (95%), Positives = 69/71 (97%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXE 327
MYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY E
Sbjct: 305 MYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 326 SGPSIVHRKCF 294
SGPSIVHRKCF
Sbjct: 365 SGPSIVHRKCF 375
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/44 (75%), Positives = 39/44 (88%)
Frame = -1
Query: 640 SLSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
++ P LGM++ GIHETTYNSI+KCDVDIRKDLYANTVLSGG+
Sbjct: 260 AMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGS 303
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 146 bits (355), Expect = 1e-35
Identities = 68/71 (95%), Positives = 69/71 (97%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXE 327
MYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY E
Sbjct: 306 MYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 365
Query: 326 SGPSIVHRKCF 294
SGPSIVHRKCF
Sbjct: 366 SGPSIVHRKCF 376
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/44 (75%), Positives = 39/44 (88%)
Frame = -1
Query: 640 SLSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
++ P LGM++ GIHETTYNSI+KCDVDIRKDLYANTVLSGG+
Sbjct: 261 AMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGS 304
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 146 bits (355), Expect = 1e-35
Identities = 67/71 (94%), Positives = 70/71 (98%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXE 327
MYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY E
Sbjct: 279 MYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 338
Query: 326 SGPSIVHRKCF 294
SGP+IVHRKCF
Sbjct: 339 SGPAIVHRKCF 349
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = -1
Query: 640 SLSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
+L P LGM++ GIHETTYNSI+KCDVDIRKDLYANTV+SGGT
Sbjct: 234 ALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGT 277
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 145 bits (352), Expect = 2e-35
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXE 327
MYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY E
Sbjct: 268 MYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 327
Query: 326 SGPSIVHRKCF 294
SGP+IVHRKCF
Sbjct: 328 SGPAIVHRKCF 338
Score = 77.4 bits (182), Expect = 9e-15
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = -1
Query: 640 SLSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
++ P LGM++ GIHETTYNSI+KCDVDIRKDLYANTVLSGGT
Sbjct: 223 AMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGT 266
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 145 bits (351), Expect = 3e-35
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXE 327
M+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY E
Sbjct: 305 MFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 326 SGPSIVHRKCF 294
SGPSIVHRKCF
Sbjct: 365 SGPSIVHRKCF 375
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/44 (75%), Positives = 39/44 (88%)
Frame = -1
Query: 640 SLSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
++ P LGM++ GIHETTYNSI+KCDVDIRKDLYANTVLSGG+
Sbjct: 260 AMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGS 303
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 130 bits (315), Expect = 7e-31
Identities = 58/71 (81%), Positives = 65/71 (91%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXE 327
M+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E
Sbjct: 79 MFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHE 138
Query: 326 SGPSIVHRKCF 294
GP IVHRKCF
Sbjct: 139 YGPPIVHRKCF 149
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = -1
Query: 640 SLSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
++ P LGM+A GIHE YN I+KCDVDIRKDLY+N VLSGG+
Sbjct: 34 AMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGS 77
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = -1
Query: 637 LSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSG 515
L P LG GIHE+ + SI KCD+D+R +L+ N VLSG
Sbjct: 2306 LFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = -3
Query: 461 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYXESGPSIVHRKCF*THR 282
+ P ++ ++I+ ++Y+VW GGS+LAS F + +K +Y E GPSI F HR
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 598 IHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
+ E N I C +D+R+ LY N VLSGG+
Sbjct: 223 LSEVVDNVIQNCPIDVRRPLYKNIVLSGGS 252
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Frame = -3
Query: 497 GIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASL 372
G +R+ +E+ + P +M++K+I+ E++++ WIGGSILASL
Sbjct: 186 GFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 616 GMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGG 512
G A G+ + S+ D+DIR L+ + +++GG
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGG 180
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -3
Query: 443 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYXESG 321
KI+I PP RK+ V++GG++LA + W++++EY E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 640 SLSNPRSLGMKACGIHETTYNSIIKCDVDIRKDLYANTVLSGGT 509
+L P + ++ G+ E +N+I D+D R + Y + VLSGG+
Sbjct: 264 ALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGS 307
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -1
Query: 577 SIIKCDVDIRKDLYANTVLSGGT 509
+I K D+D+R+ LY+N VLSGG+
Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGGS 286
>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 754
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -1
Query: 412 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTG------SASKRTARRCLQQPAAA 251
S YG +S+P S+ +NK R + PPL +G ++ K A PA
Sbjct: 571 SAGYGKEAKSAPVSIAANKPFIRPSQDQQVMPPLISGIQAMCETSPKEQAIASANLPAVG 630
Query: 250 AQFRLVIS 227
F+L+++
Sbjct: 631 ETFQLIVT 638
>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1164
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -2
Query: 420 REEVLRMDRWIDPRLPLYLPTN---VDLETRVXRVWPLHCTQEVLLNAPRV 277
++ L +DRW R+P+ N D+E R WP+H + L P V
Sbjct: 366 KKVTLAVDRWNQARMPITNKHNQPYFDVEVRRDAWWPVHPEKGKALQTPPV 416
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 412 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSAS 293
STP +V PP PSN+ + +K S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -1
Query: 370 LPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQP 260
L C SR K P Y G RT ++C +P
Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = -3
Query: 596 PRDHI*LHHKVRRGHP*GLVRQHRIVRWYPMYPGIADRMQKEI--------TALAPSTMK 441
P+ + L ++ GHP G+VR + R Y +PG+ +++++ A APST
Sbjct: 954 PQGRVKLLQELHDGHP-GMVRMKMLARSYFWWPGLDANIEQKVKDCTSCQSNAKAPSTAP 1012
Query: 440 IKIIAPPERKYS 405
+ P R +S
Sbjct: 1013 LHPWEWPSRPWS 1024
>SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 340 KSTTSLAPPLYTGSASKRTARRCLQQPAAAAQFRL 236
K+T P++T S K+T R C++ P + R+
Sbjct: 18 KNTLRFIMPVFTRSGRKKTNRTCIEDPTPQTERRV 52
>SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)
Length = 1217
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 477 LHTVGDSRVHGVPPDNTVLAYKSLRMSTS 563
L T GD +H +PP +T L+ +SL S S
Sbjct: 949 LFTTGDDFLHNIPPISTSLSNQSLNNSFS 977
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 394 VDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSA-SKRTA 281
VD+S P SLP+ K G + S P GS+ SK TA
Sbjct: 1939 VDKSEPGSLPTVKFGVTTTADASSMPKFQFGSSGSKDTA 1977
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 334 TTSLAPPLYTGSASKRTARRCLQQPAAAA 248
T+S+AP +TG+++ A +Q PAAAA
Sbjct: 2185 TSSVAPFSFTGTSTTTAAATGIQAPAAAA 2213
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Frame = -3
Query: 506 MYPGIADRMQKEITALAPSTM--------KIKIIAPP-ERKYSVWIGGSILASLSTFQQM 354
M PG R+ +EI L S +K+ PP + W+GG+I SL
Sbjct: 89 MTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADR 148
Query: 353 WISKQEYXE 327
+++ Y +
Sbjct: 149 STTRERYQQ 157
>SB_1465| Best HMM Match : PAN (HMM E-Value=0.012)
Length = 406
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 502 YMGYHRTIRCWRTSPYGCPRRTL*WSYMWSRGC 600
Y+G H + CW GCP + ++ SR C
Sbjct: 49 YLGGHNSCDCWHPIIEGCPGASKIVNFAESRDC 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,384,254
Number of Sequences: 59808
Number of extensions: 404621
Number of successful extensions: 1130
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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