Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1255
         (367 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   3.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   5.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.2  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   6.9  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    20   6.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    20   9.1  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 345 NVLERGLFC 319
           N +ERGLFC
Sbjct: 128 NCIERGLFC 136


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 74  RNQLRPQSPTSGA 112
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 74  RNQLRPQSPTSGA 112
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 6.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 212 DLDLLKGLQFRHR 174
           DLDL +GL F+ R
Sbjct: 455 DLDLSRGLDFQPR 467


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.2 bits (40), Expect = 6.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 85  PTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN 186
           P +  +FG+FT +  K       +  SS+  C N
Sbjct: 11  PAAGFHFGAFTCEGCKSFFGRTYNNISSISECKN 44


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 336 ERGLFCLLATRVLWLGLGRILRSPTKTNVY 247
           ++ L C+++T   +L    +LRS  +T ++
Sbjct: 222 KKPLLCVVSTLSCYLERTELLRSSGETRLF 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,875
Number of Sequences: 336
Number of extensions: 1254
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)