Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1255
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    82   2e-17
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   3.7  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   3.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.5  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    24   8.5  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 82.2 bits (194), Expect = 2e-17
 Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
 Frame = +3

Query: 3   KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSPATKLVLLTNKR 326
            P LKAF K Q RL RELEKKF+ +H   +   R    P  K   +T KR
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRK-SRVTQKR 114



 Score = 50.4 bits (115), Expect = 9e-08
 Identities = 23/38 (60%), Positives = 31/38 (81%)
 Frame = +2

Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 367
           ++F+  R+ILPKP  K+RV   QKRPRSRTLT+V++AI
Sbjct: 92  VIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAI 127


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 340 P*AWPLLFVSNTSFVAGLRQDLTVSN 263
           P A  +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 165 IYVPMPKLKAFQKIQIRLVRELEKKFSGKH 254
           +++P  K   F+KI+  +VRE E+K +GK+
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKN 129


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 6   IIKASGAEADSFETSISQALVELETN 83
           I  +SG+E  +F+T+ISQ   E++T+
Sbjct: 32  ISPSSGSELPNFKTTISQNNEEVKTS 57


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 6   IIKASGAEADSFETSISQALVEL--ETNSDLKAQLRELYITKAKEIEL 143
           I+  SG +     T  S    EL  +  S +K  L + Y+T A+++EL
Sbjct: 27  ILGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQVEL 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,558
Number of Sequences: 5004
Number of extensions: 24097
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)