SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1255
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...    88   2e-18
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...    74   3e-14
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     46   7e-06
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634...    29   1.5  
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628...    29   1.5  
03_02_0488 - 8824980-8825267,8825364-8827775                           29   1.5  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    28   2.0  
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    28   2.6  
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872           27   4.5  
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807...    26   7.9  
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    26   7.9  
10_08_0058 + 14521922-14522779                                         26   7.9  
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230...    26   7.9  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 46/99 (46%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
 Frame = +3

Query: 3   KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
           KI K  G E   FE S++QA  +LE  N +LK++L++LYI  A ++++  N+K+++I+VP
Sbjct: 7   KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66

Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
               KAF+KI +RLVRELEKKFSGK   ++ T R    P
Sbjct: 67  YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPP 105



 Score = 29.5 bits (63), Expect = 0.85
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 367
           +V V  R+I+  P   + V    +RPR+RTLT+V+D I
Sbjct: 93  VVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGI 126


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
 Frame = +3

Query: 57  QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 230
           QA  +LE  N +LK+ L++LYI  A +++L  N+K++IIYVP    KA++KI +RLVREL
Sbjct: 38  QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97

Query: 231 EKKFSGKH*SLLETVRSCLSP 293
           EKKFSGK   L+ T R    P
Sbjct: 98  EKKFSGKDVVLVATRRIVRPP 118



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 367
           +V V  R+I+  P   + V     RPR+RTLT+V+D I
Sbjct: 106 VVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGI 139


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 46.4 bits (105), Expect = 7e-06
 Identities = 25/64 (39%), Positives = 38/64 (59%)
 Frame = +3

Query: 111 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLS 290
           +Y+    ++   N K ++I+V     KAF+KI +RLV+ELEKKFSGK   + +  R  + 
Sbjct: 31  MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKD-VVFDATRRIVR 88

Query: 291 PATK 302
           P  K
Sbjct: 89  PLNK 92


>04_01_0483 +
           6343599-6343778,6343886-6344011,6344096-6344173,
           6344859-6344984,6345253-6345354,6345425-6345571,
           6345861-6345984,6346992-6347152
          Length = 347

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 63  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
           LVE+    D   ++ + Y+     + L++K  +++Y+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157


>04_01_0480 +
           6279576-6279755,6279863-6279988,6280074-6280151,
           6280847-6280972,6281244-6281345,6281416-6281490,
           6281852-6281975,6283005-6283107,6283546-6283617,
           6283662-6283788,6284125-6284180,6284438-6284453
          Length = 394

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 63  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
           LVE+    D   ++ + Y+     + L +K  ++IY+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +3

Query: 12  KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 188
           ++SG   + FET +S A++E+E N+ L        +  +K+I  H++   I Y  P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358

Query: 189 KAFQKI 206
            + +++
Sbjct: 359 DSSEEL 364


>03_02_0568 +
           9514715-9514944,9515174-9515300,9515529-9515684,
           9515765-9516102,9516191-9516329,9517083-9517152,
           9517201-9517307,9517387-9517437,9517549-9517660,
           9517783-9517869,9517958-9518133,9518479-9518586,
           9518654-9518812,9518888-9518971,9519053-9519258,
           9519565-9519666,9519768-9519877,9519963-9520114,
           9520380-9520548,9520841-9520878,9521963-9522571,
           9523314-9523784,9523786-9523871,9524396-9524906,
           9525388-9525412,9526001-9526051,9526228-9526301,
           9526412-9526534,9526667-9526738,9526924-9527020,
           9527174-9527283
          Length = 1649

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 21/92 (22%), Positives = 44/92 (47%)
 Frame = +3

Query: 9   IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 188
           I  SGA   + +   S  L +L    +   Q  ++YITK  +++   +K+  IY+P  + 
Sbjct: 323 IARSGAREANQKVCKSVILKDLYQEMERMKQGSQVYITKLSDVKAAREKN-GIYIPQERF 381

Query: 189 KAFQKIQIRLVRELEKKFSGKH*SLLETVRSC 284
            A ++ + + +R+  +    ++  L   + SC
Sbjct: 382 -ALEEAEKKTMRDKIEYLETQNKELKMNIESC 412


>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +3

Query: 63  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
           LVE+    D   ++ + Y+     + L +K  +++Y+   K+  F
Sbjct: 80  LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124


>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
          Length = 91

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 60  ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 170
           A++E+E N DL +    L  T+  E   H + S++IY
Sbjct: 2   AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38


>11_02_0078 -
           8074247-8074837,8075815-8076341,8076453-8077022,
           8077725-8077752
          Length = 571

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 330 GLFCLLATRVLWLGLG 283
           GL+ +LA R+LWL +G
Sbjct: 517 GLYTVLAPRILWLAIG 532


>11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,
            7921808-7922407
          Length = 1071

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 330  GLFCLLATRVLWLGLGRILRS 268
            GL+ +LA R+LWL +G  L S
Sbjct: 1017 GLYTVLAPRLLWLAIGICLLS 1037


>10_08_0058 + 14521922-14522779
          Length = 285

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 70  NSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRC 180
           +S  TPT+ P    FT+  L +L     S  SS C C
Sbjct: 18  SSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSSCTC 54


>04_04_0378 -
           24822436-24822521,24822623-24822738,24823010-24823092,
           24823772-24823918,24824004-24824051,24824153-24824353,
           24824981-24825152,24825235-24825299,24825813-24825939,
           24826436-24826528,24826608-24826696,24826804-24826950,
           24827047-24827359,24827474-24828048
          Length = 753

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 3   KIIKASGAEADSFET--SISQALVELETNSDLKAQLRELYITKAKEIELHN 149
           K +K +  E D  E    ISQAL  L + S +  + +E      KEIEL+N
Sbjct: 565 KELKKAKVEHDRKEQLCDISQALAVLASASSVAKERQEFLNLVNKEIELYN 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,970,089
Number of Sequences: 37544
Number of extensions: 158264
Number of successful extensions: 390
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -