Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1255
(367 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 124 2e-29
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 1.5
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 2.0
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 2.0
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 3.5
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 3.5
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_21459| Best HMM Match : LRR_1 (HMM E-Value=1.8e-11) 27 4.7
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 27 6.2
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 26 8.1
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 124 bits (299), Expect = 2e-29
Identities = 61/100 (61%), Positives = 77/100 (77%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 182
KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP+P
Sbjct: 10 KIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVP 69
Query: 183 KLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSPATK 302
+++AFQKIQ RLVRELEKKFSGKH ++ R P K
Sbjct: 70 QIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRK 109
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 1.5
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +3
Query: 6 IIKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYV 173
++++SG +S E+ + E N+ LK +L E L +T+ +E E+ N K + +YV
Sbjct: 1681 VLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYV 1734
Query: 174 PMPKLKAFQKIQIRLVRELEKK 239
M KL++ Q ELEK+
Sbjct: 1735 NMSKLESTQGTLEEKNAELEKE 1756
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 33 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 200
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 85 PTSKPNFGSFTLQKLKKLNYTIRS 156
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
Length = 417
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = +1
Query: 64 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 162
WS+ KPTP KPN FG T Q L+K N+ + RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +3
Query: 171 VPMPKLKAFQKIQIRLVRELEKKFSG 248
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.5 bits (58), Expect = 3.5
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +3
Query: 24 AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 188
A+ + + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296
Query: 189 KAFQKIQIRLVRELEKKF---SGKH*SLLETVR 278
+ + + +RE+E++F K+ ++LE R
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERR 329
>SB_21459| Best HMM Match : LRR_1 (HMM E-Value=1.8e-11)
Length = 137
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 117 ITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIR---LVRELEKKFSGKH*SLLETVRSCL 287
+++ + + LHN + + V + KLK +++ +R LV + + K SLLE C+
Sbjct: 45 LSRLRSLSLHNNRLTTLPVEIVKLKNLEELSLRDNPLVVRFVRDMAFKPPSLLELSGRCI 104
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 171 VPMPKLKAFQKIQIRLVRELEKKFSG 248
VP+P+++A QK++ L R +E+K +G
Sbjct: 190 VPLPQVRAMQKVKGEL-RNMEQKLNG 214
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 26.2 bits (55), Expect = 8.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 24 AEADSFETSISQALVEL--ETNSDLKAQLRELYITKAKE-IELHNKKSIII 167
A+ +S + ++ + E + D KAQL EL + KAKE L KS +
Sbjct: 217 AQQESLKETLQEQEKETIQQLEEDFKAQLNELEVEKAKEQTALEEMKSFTV 267
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,130,478
Number of Sequences: 59808
Number of extensions: 177492
Number of successful extensions: 411
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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