BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1255 (367 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 124 2e-29 SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 1.5 SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 2.0 SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 2.0 SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 3.5 SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 3.5 SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5 SB_21459| Best HMM Match : LRR_1 (HMM E-Value=1.8e-11) 27 4.7 SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 27 6.2 SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 26 8.1 >SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) Length = 157 Score = 124 bits (299), Expect = 2e-29 Identities = 61/100 (61%), Positives = 77/100 (77%) Frame = +3 Query: 3 KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 182 KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP+P Sbjct: 10 KIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVP 69 Query: 183 KLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSPATK 302 +++AFQKIQ RLVRELEKKFSGKH ++ R P K Sbjct: 70 QIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRK 109 >SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) Length = 3107 Score = 28.7 bits (61), Expect = 1.5 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%) Frame = +3 Query: 6 IIKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYV 173 ++++SG +S E+ + E N+ LK +L E L +T+ +E E+ N K + +YV Sbjct: 1681 VLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYV 1734 Query: 174 PMPKLKAFQKIQIRLVRELEKK 239 M KL++ Q ELEK+ Sbjct: 1735 NMSKLESTQGTLEEKNAELEKE 1756 >SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) Length = 1552 Score = 28.3 bits (60), Expect = 2.0 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +3 Query: 33 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 200 + ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K + Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227 >SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) Length = 1831 Score = 28.3 bits (60), Expect = 2.0 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +1 Query: 85 PTSKPNFGSFTLQKLKKLNYTIRS 156 P S N+G FT+++LK +YT +S Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438 >SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) Length = 417 Score = 27.5 bits (58), Expect = 3.5 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%) Frame = +1 Query: 64 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 162 WS+ KPTP KPN FG T Q L+K N+ + RS Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166 >SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) Length = 151 Score = 27.5 bits (58), Expect = 3.5 Identities = 11/26 (42%), Positives = 21/26 (80%) Frame = +3 Query: 171 VPMPKLKAFQKIQIRLVRELEKKFSG 248 VP+P++ A QK++ +L R++E+K +G Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93 >SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 380 Score = 27.5 bits (58), Expect = 3.5 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Frame = +3 Query: 24 AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 188 A+ + + Q E++T+ + K +RE ITK K + E +++++ + K+ Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296 Query: 189 KAFQKIQIRLVRELEKKF---SGKH*SLLETVR 278 + + + +RE+E++F K+ ++LE R Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERR 329 >SB_21459| Best HMM Match : LRR_1 (HMM E-Value=1.8e-11) Length = 137 Score = 27.1 bits (57), Expect = 4.7 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Frame = +3 Query: 117 ITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIR---LVRELEKKFSGKH*SLLETVRSCL 287 +++ + + LHN + + V + KLK +++ +R LV + + K SLLE C+ Sbjct: 45 LSRLRSLSLHNNRLTTLPVEIVKLKNLEELSLRDNPLVVRFVRDMAFKPPSLLELSGRCI 104 >SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) Length = 612 Score = 26.6 bits (56), Expect = 6.2 Identities = 11/26 (42%), Positives = 20/26 (76%) Frame = +3 Query: 171 VPMPKLKAFQKIQIRLVRELEKKFSG 248 VP+P+++A QK++ L R +E+K +G Sbjct: 190 VPLPQVRAMQKVKGEL-RNMEQKLNG 214 >SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) Length = 591 Score = 26.2 bits (55), Expect = 8.1 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +3 Query: 24 AEADSFETSISQALVEL--ETNSDLKAQLRELYITKAKE-IELHNKKSIII 167 A+ +S + ++ + E + D KAQL EL + KAKE L KS + Sbjct: 217 AQQESLKETLQEQEKETIQQLEEDFKAQLNELEVEKAKEQTALEEMKSFTV 267 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,130,478 Number of Sequences: 59808 Number of extensions: 177492 Number of successful extensions: 411 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 398 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 411 length of database: 16,821,457 effective HSP length: 74 effective length of database: 12,395,665 effective search space used: 582596255 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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