Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1255
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   105   1e-23
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AF098506-1|ABN43085.1|  145|Caenorhabditis elegans Hypothetical ...    27   5.4  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    26   9.5  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  105 bits (251), Expect = 1e-23
 Identities = 48/83 (57%), Positives = 63/83 (75%)
 Frame = +3

Query: 3   KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 182
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 183 KLKAFQKIQIRLVRELEKKFSGK 251
           +LKAF KI   LVRELEKKF G+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGR 89



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +2

Query: 254 LVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDA 364
           ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA
Sbjct: 91  ILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDA 128


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 67  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 177
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 89  VGVGFEFDQRLRDRGLEGIRLSTARFDDL 3
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>AF098506-1|ABN43085.1|  145|Caenorhabditis elegans Hypothetical
           protein H29C22.1 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 54  SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV 173
           S+A ++LE N D+     E +  K  + E +NK+  + Y+
Sbjct: 33  SRAAIKLENNDDVPELFHENFEFKTCKEERYNKEQTVDYI 72


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 3   KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSI 161
           K I+A   +     T  S+ L ELE       Q +E +  K++E+E+ NK+ +
Sbjct: 250 KEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQLV 302


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 45   TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLV 221
            TSI Q L+ ++  +  +    E  ++ +K+IE+H +   +        +  QK  ++LV
Sbjct: 2214 TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDYEKTQKYDLKLV 2272


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 45   TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLV 221
            TSI Q L+ ++  +  +    E  ++ +K+IE+H +   +        +  QK  ++LV
Sbjct: 2214 TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDYEKTQKYDLKLV 2272


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 45   TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLV 221
            TSI Q L+ ++  +  +    E  ++ +K+IE+H +   +        +  QK  ++LV
Sbjct: 2214 TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDYEKTQKYDLKLV 2272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,544,661
Number of Sequences: 27780
Number of extensions: 131961
Number of successful extensions: 339
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)