Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1255
         (367 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.16 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   2.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   2.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   8.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   8.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   8.0  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 33  DSFETSISQALVELETNSDLKAQLRE 110
           ++  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +3

Query: 3   KIIKASGAEADSFETSISQALVELETNSD-----LKAQLRELYITKAKEIELHNKKSIII 167
           +++ +     +SF  ++ + L+ LE   +     L +   +  ++ A  +ELHN     I
Sbjct: 419 QLVNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPFSI 478

Query: 168 YVPMPKL 188
           Y  + +L
Sbjct: 479 YSFLERL 485


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +3

Query: 3   KIIKASGAEADSFETSISQALVELETNSD-----LKAQLRELYITKAKEIELHNKKSIII 167
           +++ +     +SF  ++ + L+ LE   +     L +   +  ++ A  +ELHN     I
Sbjct: 457 QLVNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPFSI 516

Query: 168 YVPMPKL 188
           Y  + +L
Sbjct: 517 YSFLERL 523


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 214 LIWIF*KAFSLGIGT*MMIDFLLCSSISLAFVM 116
           +IWIF  + SL   + M I  L    I +AF M
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEM 110


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 181 GIGT*MMIDFLLCSSISLAFVM*SSRSWALRSELVSSS 68
           G+ T +++  L+C SIS          W L  E +  S
Sbjct: 416 GLITGLIMRVLICGSISEEQKFDDEAHWELEEESLQGS 453


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 214 LIWIF*KAFSLGIGT*MMIDFLLCSSISLAFVM 116
           +IWIF  + SL   + M I  L    I +AF M
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEM 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,585
Number of Sequences: 438
Number of extensions: 1509
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)