Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1255
(367 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 89 8e-19
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 89 8e-19
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 86 6e-18
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 82 1e-16
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 82 1e-16
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 3.8
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 27 5.0
At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein si... 26 6.7
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 26 8.8
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 26 8.8
At2g20340.1 68415.m02375 tyrosine decarboxylase, putative simila... 26 8.8
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 26 8.8
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 89.0 bits (211), Expect = 8e-19
Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
KAF+KI +RLVRELEKKFSGK + T R P
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPP 105
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 367
++FV R+I+ P + V +RPR+RTLTSV++A+
Sbjct: 93 VIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAM 126
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 89.0 bits (211), Expect = 8e-19
Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
KAF+KI +RLVRELEKKFSGK + T R P
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPP 105
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 367
++FV R+I+ P + V +RPR+RTLTSV++A+
Sbjct: 93 VIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAM 126
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 86.2 bits (204), Expect = 6e-18
Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSPATK 302
KAF+KI RLVRELEKKFSGK + T R + P K
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKD-VIFVTTRRIMRPPKK 107
Score = 30.7 bits (66), Expect = 0.31
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 367
++FV R+I+ P V +RPR+RTLTSV++A+
Sbjct: 93 VIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAM 126
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 81.8 bits (193), Expect = 1e-16
Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
KA++KI +RLVRELEKKFSGK L+ T R P
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPP 105
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 367
++ + R+I+ +P K A KRPR+RTLTSV++AI
Sbjct: 93 VILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAI 126
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 81.8 bits (193), Expect = 1e-16
Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
KA++KI +RLVRELEKKFSGK L+ T R P
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPP 105
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 367
++ + R+I+ +P K A KRPR+RTLTSV++AI
Sbjct: 93 VILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAI 126
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 70 NSKPTPTSKPNFGSF 114
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 51 ISQALVELETNSDLKA-QLRELYITKAKEIE 140
I QA E++ LKA +++EL+I K KE+E
Sbjct: 333 IQQAEAEVKRLDQLKASRIKELFIKKQKELE 363
>At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 448
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 70 NSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSS 168
N KP PTS+ N+G F + K N +S++
Sbjct: 317 NQKPGPTSERNYGLFYPNEGKVYNVPFTKKSTT 349
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 25.8 bits (54), Expect = 8.8
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = +3
Query: 9 IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHNKKSIIIYVPM 179
+KA SF+ I + +EL T+ DL+ E EI EL K + V
Sbjct: 557 VKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSKKVVDLTSVAQ 616
Query: 180 PKLKAFQKIQIRLVRELEKKFSG 248
+ KA ++ L K +G
Sbjct: 617 GEKKAVHDAKVELAAAYSKLLAG 639
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 81 NSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQK 203
N +Q++E ++ ++EL N+ ++ Y+P KA ++
Sbjct: 358 NMSEMSQVKENHMQSQLQVELENQSDVMRYIPNGHKKALRQ 398
>At2g20340.1 68415.m02375 tyrosine decarboxylase, putative similar
to tyrosine/dopa decarboxylase [Papaver somniferum]
GI:3282527, SP|Q06087 Tyrosine decarboxylase 3 (EC
4.1.1.25) {Petroselinum crispum}; contains Pfam profile
PF00282: Pyridoxal-dependent decarboxylase conserved
domain
Length = 490
Score = 25.8 bits (54), Expect = 8.8
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +3
Query: 63 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKF 242
++ L + LK+ +R +I AKE E + + P++ A ++ V++ EKK
Sbjct: 371 VLRLYGSETLKSYIRN-HIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVPVKDEEKKC 429
Query: 243 SGKH*SLLETVRS 281
+ ++ LL+ V S
Sbjct: 430 NNRNRELLDAVNS 442
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +1
Query: 82 TPTSKPNFGSFTLQKLKKLNY----TIRSRSSSMCRCL 183
+P P GSFT + NY +RS S+S C L
Sbjct: 7 SPVVTPALGSFTFSSRPRSNYIVMSAVRSNSASTCPIL 44
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,267,061
Number of Sequences: 28952
Number of extensions: 129724
Number of successful extensions: 393
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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