Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1253
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.2  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    27   3.2  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   4.2  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   5.6  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    26   5.6  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.7  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   9.7  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +1

Query: 280  CNHVKSRGSKERPQIY*NLYNIYVKQKFYTLF*AISRTEEYEISYTYREYREGVQNTNIF 459
            C+ + +  S+        L + Y+K+KF ++   +  T  Y  SY + +Y   + +T   
Sbjct: 1779 CHKLATLASQFNDDALIELLDTYLKRKFRSIKDFLKHTVSYLYSYYFEDYELEIVSTLTM 1838

Query: 460  F 462
            F
Sbjct: 1839 F 1839


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 145 IHFAGLVFITRCLFVRGSHK 204
           +H AG  FIT+  FVR  HK
Sbjct: 13  VHNAGFTFITKFPFVRNVHK 32


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +2

Query: 35   QELRSSTMYVRVKTENSRLFLGTYSYSFTIRCIASNVYISLVWFLLHDVYSF 190
            QEL    +  RV +ENSRL  G  ++ FT +  AS++   L  FLL     F
Sbjct: 1114 QELLDKRIITRVNSENSRLQPGR-NFQFTEK-FASSLKSPLPPFLLSQAKRF 1163


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 84  LDCFSVPTRIRSQFGASPVTYTFRWFGFYY--TMFIRSWKP 200
           L C+S  T +   FGAS       WF F    T+ I S+ P
Sbjct: 129 LPCWSSGTGLAGLFGASSYLVMTTWFNFSVRSTLIISSFLP 169


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 167 LLHDVYSFVEAINMKEVLNNKFEISSSCLN 256
           LLH    FV+  + +E L NK E+   C N
Sbjct: 16  LLHSDCMFVKKKSARECLKNKDELPEECKN 45


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 373  KGYKIFALRKYYIDFSKF 320
            K YK+ AL KY IDFS F
Sbjct: 1236 KFYKVKALTKYDIDFSLF 1253


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 122  IRCIASNVYISLVWFLLHDVYSFV--EAINMKEVLNNKFEISSSCLN*IRIPLTPVTT*N 295
            I  +  + Y SLVW L +D+   +  E    K+V   K  +     N   IP+T +   N
Sbjct: 3000 IESLDPDYYKSLVWMLNNDITDIITEEFAVEKDVFGEK-TVVDLIPNGRNIPVTELNKQN 3058

Query: 296  HVGR 307
            +V R
Sbjct: 3059 YVNR 3062


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 84  EFSVLTRTYIVELRSSCF 31
           +FSV  R  +V+LRS CF
Sbjct: 763 DFSVNPRVEVVQLRSDCF 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,450
Number of Sequences: 5004
Number of extensions: 56761
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)