Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1253
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12546| Best HMM Match : JTB (HMM E-Value=2.4)                       31   1.1  
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 30   1.9  

>SB_12546| Best HMM Match : JTB (HMM E-Value=2.4)
          Length = 159

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 47  SSTMYVRVKTENSRLFLGTYSYSFTIRCIASNVYISLVWFLLHDVYSFVEAINMKEVLN 223
           SS +Y +V T  S L  G Y    T+R + S  Y  +   L HD     + I  K  LN
Sbjct: 43  SSGLYCKVATVRS-LLSGPYCKVATVRSLLSGRYCQVATTLFHDYTRHYQEIRGKRSLN 100


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 29  KKQELRSSTMYVRVKTENSRLFLGTYSYSFTIRCIASNVYISLVWF-LLHDVY 184
           KK+ LR+ T Y  V    + LF+G  S  + I  +  N Y S  WF LLH+V+
Sbjct: 37  KKKALRTHTNYFIVSLSAADLFVGVISAPWWIVLMFVN-YHSEGWFKLLHNVW 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,416,383
Number of Sequences: 59808
Number of extensions: 380990
Number of successful extensions: 892
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)