Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1253
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z69384-8|CAM06585.1|  495|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z69384-7|CAA93417.2|  502|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    28   6.8  
U64609-8|AAB04605.2|  465|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 101 TYSYSFTIRCIASNVYISLVWFLLHDVYSFVEAINMKEVLNNKFEISSSCL 253
           ++++S+TIRCI   V++ L   L     +F    N  E      E++S C+
Sbjct: 625 SFTFSYTIRCIFLIVFLVLFQTLNRYFANFASPFNFYESPALSRELNSECI 675


>Z69384-8|CAM06585.1|  495|Caenorhabditis elegans Hypothetical
           protein T11G6.2b protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 89  LFLGTYSYSFTIRCIASNVYISLVWFLL 172
           LFLG Y YSF I C    +Y  LV+F L
Sbjct: 199 LFLG-YQYSFLIACSLLFIYSFLVFFQL 225


>Z69384-7|CAA93417.2|  502|Caenorhabditis elegans Hypothetical
           protein T11G6.2a protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 89  LFLGTYSYSFTIRCIASNVYISLVWFLL 172
           LFLG Y YSF I C    +Y  LV+F L
Sbjct: 206 LFLG-YQYSFLIACSLLFIYSFLVFFQL 232


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 409 KFHTPPSAKLPKKGYKIFALRKYYIDFSKFADVLSTHVILRGYRSQWYSNL 257
           ++ + P AK+   G  +   R Y +D S F   L  H++   + S W S L
Sbjct: 203 EYQSIPLAKIEDFG--VHCKRYYSLDVSFFKSQLDAHILTSLWNSYWISTL 251


>U64609-8|AAB04605.2|  465|Caenorhabditis elegans Hypothetical
           protein T28H11.8 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 243 LEISNLLFNTSFMFMASTNE*TSCNKNQTSEMYTLLAMHRIVNEYE*VPRNSL 85
           L +   + +T+F +  S N   +CN  ++ + Y L   H    E E VP  +L
Sbjct: 185 LGVGTFISSTAFAYYYSDNVEKNCNLEESEKKYILAGKHS-TKEKEKVPYKAL 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,835
Number of Sequences: 27780
Number of extensions: 310331
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)