Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1252
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         24   1.4  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.6  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 442 TKRNEHFQPRTRRRAESDQRH 504
           T+RN +++PRT R     ++H
Sbjct: 227 TRRNPYYRPRTSRTEPPRRKH 247


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = +2

Query: 365 RPPGGGHTNIFDSEPE--PPRTGRRAVPPSAT------STFSHGQGDEPKATNGT 505
           R PGG H+     EPE    ++    VP S +      + FS GQ + P ++  +
Sbjct: 16  RSPGGDHSENMQDEPENLSNKSNSITVPLSISTGQRLPANFSFGQVNSPPSSTSS 70


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 10   PHSACSQKYACV 45
            PH +CS  Y CV
Sbjct: 1214 PHESCSSFYVCV 1225



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 5/11 (45%), Positives = 6/11 (54%)
 Frame = -3

Query: 445  WWNGTAAGPRW 413
            WW+ T   P W
Sbjct: 1042 WWSSTTTSPWW 1052


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 10  PHSACSQKYACVQWK 54
           PH  C + Y CV  K
Sbjct: 484 PHELCDKYYRCVHGK 498


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,087
Number of Sequences: 336
Number of extensions: 3513
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)