Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1252
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 29 0.85
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.85
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 2.6
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 27 3.4
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 27 3.4
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 6.0
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 7.9
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 7.9
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 28.7 bits (61), Expect = 0.85
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 439 STKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETP 573
S++ N QP+T RR RH ++N STPK + Q Q TP
Sbjct: 263 SSEDNLTIQPQTPRRRHKRSRH-NSSNLASTPKRNGYKQPLQITP 306
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +2
Query: 368 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTS 508
PP G T P T + PP ST S G P + TS
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTS 338
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +2
Query: 368 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTS 508
PP G T P T + PP ST S G P + TS
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTS 392
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 390 TSSTPNRSHRGPAAVPF--HQAQRALSATDKETSRKRPTALHSDQRSVHS 533
TS +P+ + P +P H A ++ +E KRP +LHS S +S
Sbjct: 189 TSPSPSETADSPNKLPKQKHPAYSFVTLPKREEILKRPASLHSRVESTNS 238
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/50 (26%), Positives = 19/50 (38%)
Frame = +1
Query: 409 GATEDRPPCRSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQI 558
G +P NE P + ES+ T TPK+ P P++
Sbjct: 200 GPPSGQPNGHIESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEV 249
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 427 PPCRSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQI--QQETPAAAERAPK 597
PP T++N P + + +AT P ++ PQ+ QQ+T +A ++ P+
Sbjct: 334 PPYARTRQNLLSSPSKQTPVNNVVDASVATQKDGIPGKAASPQVQQQQQTSSAQQQQPQ 392
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 192 KICVRRILLHYKTGEE*YGKIKQTSEATKTSINKKTK 302
K+C RIL+ ++ E K +Q+S K S KK K
Sbjct: 276 KVCKNRILVEHQDTEFHLLKQRQSSMGGKVSAKKKQK 312
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 212 YTSYTNFLPFLLSTTPVCHGIVYKK 138
+ S TN + + P C+GI+++K
Sbjct: 546 FASTTNIMSTFIHNEPTCYGIIHEK 570
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 445 KRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAERAP 594
K N+H + R + E + T + P E+P ++ Q ++ RAP
Sbjct: 638 KANKHVEKRVQESNELLDLIGLTTPSVAEPLETPVDEMTQSPQSSLSRAP 687
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 440 PPSATSTFSHGQGDEPKATNGTS 508
PP++TS S+G G P+ G+S
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSS 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,088
Number of Sequences: 5004
Number of extensions: 53719
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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