Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1252
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1016 + 13228113-13228964 30 1.5
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 30 2.0
08_02_1198 + 25204896-25206755 29 4.7
07_03_1136 + 24218601-24218734,24218769-24219906 29 4.7
01_07_0046 - 40714701-40714763,40715266-40715343,40716398-407164... 29 4.7
01_02_0108 - 11200964-11201338 29 4.7
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 28 6.2
01_05_0283 - 20354065-20354154,20354579-20354890,20355566-203557... 28 6.2
10_08_0271 - 16382655-16384451 28 8.3
07_03_0089 - 13300902-13301645 28 8.3
06_03_0592 + 22585546-22588573,22588680-22589032 28 8.3
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 28 8.3
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 28 8.3
>03_02_1016 + 13228113-13228964
Length = 283
Score = 30.3 bits (65), Expect = 1.5
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 337 RSSSIKQGAPPPWWWSH*HLRLRTGATEDRPPCRSTKRNE---HFQPRTRRRAESDQRHF 507
R++ + + APPP +H H LR GA P +T+R+ F PRT +D RH
Sbjct: 117 RNTMVLRPAPPPAM-NHPHPLLRGGAVTGAAPPVTTRRSSGTGFFLPRT---TAADPRH- 171
Query: 508 IATNGQSTPKESPEPQIQQETPA-AAERAP 594
N T + P Q T A + +AP
Sbjct: 172 --ANHHMTAAAARPPYYQCSTEAVSGTKAP 199
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 341 ARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSH 469
A L +R RPP GG T + + P+ P AT F H
Sbjct: 171 ASLYTRAPRPPRGGKTYLLTAAPQCPYPDASLAAALATGLFDH 213
>08_02_1198 + 25204896-25206755
Length = 619
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 328 PQ*RSSSIKQGAPPPWW 378
PQ R + +G PPPWW
Sbjct: 190 PQQRKYPLDKGVPPPWW 206
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -1
Query: 444 GGTARRPVLGGSGSESKMLV*PPPGGRSTLLDR 346
GG A R VLGG G L PP GGR L R
Sbjct: 140 GGGAPRRVLGGGGG-GGALARPPGGGRGGALGR 171
>01_07_0046 -
40714701-40714763,40715266-40715343,40716398-40716462,
40717075-40717201,40717279-40717319,40717621-40717690,
40718070-40718191,40719047-40719107,40719182-40719292,
40719387-40719461,40719815-40719842,40719929-40719978,
40720228-40720290,40720385-40720426,40720562-40720631,
40720663-40720713,40721857-40722041,40722374-40722775
Length = 567
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = -1
Query: 447 LGGTARRPVLGGSGSESKMLV*PPPGGRSTLLDRRAPSLRPTLNGVEVI 301
LG TAR P S + + +V PPP RST R A + RPT V I
Sbjct: 124 LGRTARSP----SPALGRNIVEPPPTVRSTSAGRPAVASRPTTTVVPPI 168
>01_02_0108 - 11200964-11201338
Length = 124
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 302 MTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST 460
M ST NVGL+ A +S ++RP G +F P R G AV S +T
Sbjct: 1 MASTLTNVGLSTPAAAASSLVRPVAGAGRVVF---PRVGRGGFAAVRASGPAT 50
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 410 EPPRTGRRAVPPSATSTFSHGQGDEPKATN 499
+ P+ G A P A STF H Q P ATN
Sbjct: 586 QAPQAG--APYPQAASTFPHSQASHPAATN 613
>01_05_0283 -
20354065-20354154,20354579-20354890,20355566-20355763,
20356371-20356754,20357445-20357858,20359771-20360022
Length = 549
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 436 RSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAERAPKA 600
R+ KR QPR + + + Q P+ P+PQ Q E A AE KA
Sbjct: 25 RTYKRRR--QPRPEPQQQPQPQPQSEPEPQQQPQPQPQPQPQPEAEAEAEAEAKA 77
>10_08_0271 - 16382655-16384451
Length = 598
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 344 RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPS 448
R +S V R GGG T+ P PP G A P S
Sbjct: 64 RKASPVDRGGGGGGTSFSGHSPSPPDAGGSAKPES 98
>07_03_0089 - 13300902-13301645
Length = 247
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 463 QPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAERAPKAD 603
QP + + + + N Q PK +P+P +Q+ + +PKAD
Sbjct: 125 QPDPKPTPQPNPKQDPQPNPQPDPKPTPQPDPKQDPQPNPQPSPKAD 171
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 346 TSSVIEANVEWC*SHFVFLFIDVFVASE 263
+SSV+ N+ W HF+F I + + +E
Sbjct: 3 SSSVLSPNIAWVLCHFIFCSISLAICNE 30
>06_01_0474 -
3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 373 WWWSH*HL---RLRTGATEDRPPCRSTKRNEHFQPRTRRRAESDQRH-FIATNGQSTPKE 540
WW + H R+R GAT D+ CR +N R +AE +++H ++ TP+E
Sbjct: 763 WWTNVAHYNRERIRRGATVDKTVCR---KNLGRLTRLWLKAEQERQHNYLKDGPYVTPEE 819
Query: 541 S 543
+
Sbjct: 820 A 820
>05_01_0460 -
3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 373 WWWSH*HL---RLRTGATEDRPPCRSTKRNEHFQPRTRRRAESDQRH-FIATNGQSTPKE 540
WW + H R+R GAT D+ CR +N R +AE +++H ++ TP+E
Sbjct: 763 WWTNVAHYNRERIRRGATVDKTVCR---KNLGRLTRLWLKAEQERQHNYLKDGPYVTPEE 819
Query: 541 S 543
+
Sbjct: 820 A 820
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,052,962
Number of Sequences: 37544
Number of extensions: 443189
Number of successful extensions: 1604
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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