Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1252
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.056
SB_1115| Best HMM Match : NusG (HMM E-Value=2.4)                       34   0.13 
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)                 33   0.17 
SB_8439| Best HMM Match : rve (HMM E-Value=1.5e-18)                    33   0.22 
SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)                31   0.68 
SB_16837| Best HMM Match : rve (HMM E-Value=2.1e-20)                   30   1.6  
SB_13975| Best HMM Match : SGS (HMM E-Value=3.4)                       30   2.1  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     30   2.1  
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   29   3.6  
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                29   4.8  
SB_51152| Best HMM Match : Rep-A_N (HMM E-Value=0.049)                 28   6.4  
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)               28   6.4  
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)                   28   6.4  

>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 397  RLRTGATEDRPPCRSTK-RNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEP 552
            R+ T  ++DRPP  S + R+   QP  R   ++ Q+  I ++  S+P  SP+P
Sbjct: 962  RMETTQSKDRPPAESDRNRSWDKQPSPRIGRKNQQQLTIPSDSSSSPSTSPQP 1014


>SB_1115| Best HMM Match : NusG (HMM E-Value=2.4)
          Length = 175

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 442 TKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAERAPK 597
           T R+   Q  T +    ++RH + TN Q+   + PEP+ Q ++P     APK
Sbjct: 103 TPRSYIIQTETGQELRRNRRHLLKTNEQAPEVKLPEPE-QPDSPTETPTAPK 153


>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
          Length = 924

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 442 TKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAERAPK 597
           T R+   Q  T +    ++RH + TN Q+   + PEP+ Q ++P     APK
Sbjct: 845 TPRSYIIQTETGQELRRNRRHLLKTNEQAPEVKLPEPE-QPDSPTEQPTAPK 895


>SB_8439| Best HMM Match : rve (HMM E-Value=1.5e-18)
          Length = 317

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 442 TKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAERAPK 597
           T R+   Q  T +    ++RH + TN Q+   + PEP+ Q ++P     APK
Sbjct: 245 TPRSYIIQTETGQGLRRNRRHLLKTNEQAPEVKPPEPE-QPDSPTEQPTAPK 295


>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
          Length = 800

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 451 NEHFQPRTRRRAESDQRHFIATNGQSTPKESPEP-QIQQETPAAAERAPKADS 606
           ++++  +  ++ E  ++  IA   + T +   EP Q  QETP A E +PK DS
Sbjct: 43  HKYYVAQAIQQEEQQRQQVIAKTVEITAESPDEPTQEAQETPQAEEDSPKTDS 95


>SB_16837| Best HMM Match : rve (HMM E-Value=2.1e-20)
          Length = 453

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 442 TKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAERAPK 597
           T R+   Q  T +    ++RH + TN Q+   + PEP+ Q ++P     A K
Sbjct: 374 TPRSYIIQTETGQELRRNRRHLLKTNEQAPEVKVPEPE-QPDSPTEQPTATK 424


>SB_13975| Best HMM Match : SGS (HMM E-Value=3.4)
          Length = 473

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +1

Query: 397 RLRTGATEDRPPCRSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQ 555
           +L   A EDRP     K     +  TRR+    +RH      +  P E PEPQ
Sbjct: 6   KLNRAAKEDRPEREPEKPAWLVEAETRRKLHDRRRH---AGPKVKPAEEPEPQ 55


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 442 TKRNEHFQPRTRRRAESDQRHFIATNGQSTPKES---PEPQIQQETPAAAERAPKADS 606
           + R+ H  PR  RR+ ++  + + +   STP+ S   P     + + A +  AP +D+
Sbjct: 396 SSRDGHMSPRMARRSSAENVNAVPSRSPSTPRRSVTLPAGHYGRRSSAGSNSAPWSDA 453


>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 442 TKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETP 573
           T R+   Q  T +    ++RH + TN Q+   + PEP+ Q ++P
Sbjct: 44  TPRSYIIQTETGQELRRNRRHLLKTNEQAPEVKPPEPE-QPDSP 86


>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 442 TKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETP 573
           T R+   Q  T +    ++RH + TN Q+   + PEP+ Q ++P
Sbjct: 64  TPRSYIIQTETGQELRRNRRHLLKTNEQAPEVKPPEPE-QPDSP 106


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 319  QRWPQ*RSSSIKQGAPPPWWWSH 387
            QRW +   S+ ++G PPP+W  H
Sbjct: 988  QRWDEWDRSTGERGPPPPYWDEH 1010


>SB_51152| Best HMM Match : Rep-A_N (HMM E-Value=0.049)
          Length = 812

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -1

Query: 360 TLLDRRAPSLRPTLNGVEVIXXXXXXXXXXLPKSV*FFHII--LLLFYNEAIYVVHKFST 187
           TLLDR   S+  TL G E +                 F I+  L LFY   ++ VHK  +
Sbjct: 313 TLLDRSEKSVTATLWGDETLGKYAFGKVIPDASDNVSFKIVYALKLFYMSIVFFVHKGRS 372

Query: 186 LS 181
           LS
Sbjct: 373 LS 374


>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
          Length = 754

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 359 VLRPPGGGHTNIFDSEPEPPRTGRRAVPPSAT 454
           V   P       F  E EPP+  R+  PPS T
Sbjct: 318 VTTSPSNARRRFFGFETEPPQASRQCSPPSRT 349


>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
          Length = 844

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 399 TPNRSHRGPAAVPFHQAQRALSATDKETSRKRPTALHSDQ 518
           +P R   GP + P ++ +R+  A    +S   P++ H D+
Sbjct: 184 SPQRIENGPDSPPINEKKRSKEAGSPSSSSSTPSSKHRDR 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,667,249
Number of Sequences: 59808
Number of extensions: 450550
Number of successful extensions: 1352
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)