Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1252
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr... 29 3.2
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 29 4.3
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 29 4.3
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 26 4.8
Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical p... 27 9.8
Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical p... 27 9.8
Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical p... 27 9.8
Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical p... 27 9.8
Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical p... 27 9.8
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical pr... 27 9.8
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 27 9.8
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 27 9.8
AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal gro... 27 9.8
AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal gro... 27 9.8
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 27 9.8
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +1
Query: 328 PQ*RSSSIKQGAPPPWWWSH*HLRLRTGATEDRPPC-RSTKRNEHFQPRTRRRAESDQRH 504
P+ R S K +P P R R+ + PP + K P RRR Q
Sbjct: 388 PRRRRSPSKSRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSK 447
Query: 505 FIATNGQSTPKESPEPQIQQETPAAAE-RAPK 597
A + +P +SP+ ++ +P+ ++ R+P+
Sbjct: 448 SPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPR 479
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 397 RLRTGATEDRPPCRSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPA 576
R ++G+ R RS ++ P RRR+ S + +S K P P ++ +P+
Sbjct: 296 RAKSGSPRRR---RSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPS 352
Query: 577 AAERAPKA 600
A++ P A
Sbjct: 353 ASKSPPPA 360
>Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical
protein F36G9.7 protein.
Length = 280
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 243 IILLLFYNEAIYVVHKFSTLSFKYYTSLSRHSV*KINK 130
+ +L+F + IY HKF L+F+ R S+ K NK
Sbjct: 84 VAVLIFIDRLIYWKHKFDALNFEVKFPRPRSSIRKSNK 121
>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical protein
F52H3.7a protein.
Length = 1245
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +3
Query: 312 HHSTLASMTELVYQAGC-SAPLVVVTLTSSTPNRSHRGPAAV---PFHQAQ-RALSATDK 476
H +++ + E V+ A SAP + S H+ AA P H+ + A+ K
Sbjct: 734 HAASVEDVIEAVHIASNESAPTTEAAPSESIQAEDHKDEAASTAEPAHEESVTVVEASHK 793
Query: 477 ETSRKRPTALHSDQRSVHS*GESGATDPAGD 569
E + + + SVH E A P+GD
Sbjct: 794 EPQAESAAPVEENIESVHVASEESAPAPSGD 824
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 415 TEDRPPCRSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAA 579
++ PP S R + QP+ +H A N + + P PQ Q P A
Sbjct: 519 SQQPPPQMSQMRMQQQQPQQPNMNSPQSQHQRAPNNMNMQQNLPNPQQQMRIPQA 573
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 317 FNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKAT 496
FN N G + + P T++ ++ PP+TGR+ + P+ + F Q T
Sbjct: 298 FNNDFNGGNKFNQ--FPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAPF---QNAPAPFT 352
Query: 497 NGTS 508
NG S
Sbjct: 353 NGPS 356
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 25.8 bits (54), Expect(2) = 4.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 413 PPRTGRRAVPPSATSTFSHGQGDE 484
PP T R + PPSATS+ DE
Sbjct: 66 PPGTVRASFPPSATSSVVSDGSDE 89
Score = 21.0 bits (42), Expect(2) = 4.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 350 SSRVLRPPGGGHTNIFDSEPEPPRTG 427
S+R PP T + PPR G
Sbjct: 29 SNRTTPPPSSEETAVVPEPVMPPRKG 54
>Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical
protein T11F9.10 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 364 PPPWWWSH*HLRLRTGA---TEDRPPCRSTKRNEHFQPRTRRR 483
PPP H H+R T T +RP C +R P+ RRR
Sbjct: 16 PPPTTVLHLHIRPPTSCATCTSNRPRCTPPRRIRQCGPKFRRR 58
>Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical
protein Y57G11C.24e protein.
Length = 665
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 366 APLVVVTLTSSTPNRSHRGPAAVPFHQAQ 452
AP V +TPN+ HRG +A P H Q
Sbjct: 201 APYGVADRAMATPNQIHRGHSAPPEHFRQ 229
>Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical
protein Y57G11C.24d protein.
Length = 845
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 366 APLVVVTLTSSTPNRSHRGPAAVPFHQAQ 452
AP V +TPN+ HRG +A P H Q
Sbjct: 381 APYGVADRAMATPNQIHRGHSAPPEHFRQ 409
>Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical
protein Y57G11C.24h protein.
Length = 740
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 366 APLVVVTLTSSTPNRSHRGPAAVPFHQAQ 452
AP V +TPN+ HRG +A P H Q
Sbjct: 453 APYGVADRAMATPNQIHRGHSAPPEHFRQ 481
>Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical
protein Y57G11C.24a protein.
Length = 862
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 366 APLVVVTLTSSTPNRSHRGPAAVPFHQAQ 452
AP V +TPN+ HRG +A P H Q
Sbjct: 398 APYGVADRAMATPNQIHRGHSAPPEHFRQ 426
>Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical
protein Y57G11C.24g protein.
Length = 917
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 366 APLVVVTLTSSTPNRSHRGPAAVPFHQAQ 452
AP V +TPN+ HRG +A P H Q
Sbjct: 453 APYGVADRAMATPNQIHRGHSAPPEHFRQ 481
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical protein
F29D10.4 protein.
Length = 1100
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 406 TGATEDRPPCRSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEP 552
T + +RP T R + + TRR +++Q + NGQS +P P
Sbjct: 928 TRPSTERPQGGYTPRRDQLRTSTRRTKQNNQSY--GQNGQSQAMRAPVP 974
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 98 WTLLPLLFVECLLIFYTLCRDKLV*YLKERV 190
W LL LLF EC+ I ++L D+ ++K +
Sbjct: 469 WALLWLLFFECIAISWSLGIDRWYEHMKSMI 499
>Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical
protein F55A11.7 protein.
Length = 395
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 360 CSAPLVVVTLTSSTPNRSHRGPAAVPFHQAQRALSATDKETSRK 491
C PLV V T + N + G HQ R AT +++ K
Sbjct: 91 CQCPLVFVHTTCAIDNEAFFGTNCTQCHQMYRPEQATPRQSPTK 134
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 427 PPCRSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAERAP 594
P RS R+ R+R R+ S R + + + + SP P+ + A+ R+P
Sbjct: 102 PRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLKREASRSRSP 157
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 98 WTLLPLLFVECLLIFYTLCRDKLV*YLKERV 190
W LL LLF EC+ I ++L D+ ++K +
Sbjct: 469 WALLWLLFFECIAISWSLGIDRWYEHMKSMI 499
>AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant B
protein.
Length = 740
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 366 APLVVVTLTSSTPNRSHRGPAAVPFHQAQ 452
AP V +TPN+ HRG +A P H Q
Sbjct: 453 APYGVADRAMATPNQIHRGHSAPPEHFRQ 481
>AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant A
protein.
Length = 917
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 366 APLVVVTLTSSTPNRSHRGPAAVPFHQAQ 452
AP V +TPN+ HRG +A P H Q
Sbjct: 453 APYGVADRAMATPNQIHRGHSAPPEHFRQ 481
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 98 WTLLPLLFVECLLIFYTLCRDKLV*YLKERV 190
W LL LLF EC+ I ++L D+ ++K +
Sbjct: 469 WALLWLLFFECIAISWSLGIDRWYEHMKSMI 499
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,977,731
Number of Sequences: 27780
Number of extensions: 340371
Number of successful extensions: 1112
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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