Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1252
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   8.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +1

Query: 439  STKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQE 567
            S+++ +  QP+ +++ +  Q+       Q   ++ P+PQ QQ+
Sbjct: 1496 SSQKTQQQQPQQQQQQQQQQQP--QQQSQQPQQQQPQPQQQQQ 1536


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 152 IVYKKSTNTQQIAMATKSTSNY 87
           ++Y  +    ++ +ATK+T NY
Sbjct: 112 VLYNNADGNFEVTLATKATLNY 133


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 155 GIVYKKSTNTQQIAMATKSTSNYNK*LN 72
           GIVYK     +Q+A     T  Y+  LN
Sbjct: 79  GIVYKALYKGEQVAAKIIQTEKYSNMLN 106


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 414  GSGSESKMLV*PPPGGRSTLLDRRAPSLRPTL 319
            G GS+   +V    G     LD+R P LR  L
Sbjct: 1612 GHGSDKDDVVYQQTGVGGATLDKRRPDLRDEL 1643


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 177 KYYTSLSRHSV*KINKHSTNSNGNK 103
           K  +SLS + +  I+ ++ N+N NK
Sbjct: 80  KIISSLSNNYISNISNYNNNNNYNK 104


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 177 KYYTSLSRHSV*KINKHSTNSNGNK 103
           K  +SLS + +  I+ ++ N+N NK
Sbjct: 318 KIISSLSNNYISNISNYNNNNNYNK 342


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 243 IILLLFYNEAIYVVHKFSTLSFKYYTSLS 157
           I+LL+FY   ++ + + +     YY +L+
Sbjct: 21  IVLLIFYGSIMFSMTQVNKEECDYYQNLN 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,832
Number of Sequences: 438
Number of extensions: 4317
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)