Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1252
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16270.1 68414.m01948 protein kinase family protein contains ... 37 0.011
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati... 30 1.7
At3g02970.1 68416.m00292 phosphate-responsive 1 family protein s... 29 3.0
At4g18260.1 68417.m02711 cytochrome B561-related related to cyto... 29 3.9
At5g42030.1 68418.m05117 expressed protein similar to unknown pr... 28 5.2
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 28 6.9
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 28 6.9
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 28 6.9
At1g80070.1 68414.m09373 splicing factor, putative strong simila... 28 6.9
At5g54290.1 68418.m06762 cytochrome c biogenesis protein family ... 27 9.1
At3g52950.1 68416.m05837 CBS domain-containing protein / octicos... 27 9.1
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 409 GATEDRPPCRSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAER 588
G T+ P + + N + + R E + RH +ATN Q+ P ++ + +++ P+ A
Sbjct: 455 GITQQNAPVQVEEPNIKPETKVRDYVEPENRHILATNHQN-PPQADDTEVKNREPSVATT 513
Query: 589 APKADS 606
P D+
Sbjct: 514 VPSQDA 519
>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
(PAUSED) contains Pfam profile: PF04150 exportin-t,
identical to PAUSED gi:30909318
Length = 988
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 330 SMTELVYQ--AGCSAPLVVVTLTSSTPNRSHRGPAAVPFHQAQRALSATDKETSRKRPTA 503
SMTE + +GC + L+ + LT+ P SHR A V R + +E S+ P
Sbjct: 471 SMTEEAMKTGSGCLSELIPMLLTTQFPGHSHRLVALVYLENITRYMKFI-QENSQYIPNV 529
Query: 504 LHS--DQRSVH 530
L + D R +H
Sbjct: 530 LGAFLDDRGLH 540
>At3g02970.1 68416.m00292 phosphate-responsive 1 family protein
similar to phi-1 (phosphate-induced gene) [Nicotiana
tabacum] GI:3759184; contains Pfam profile PF04674:
Phosphate-induced protein 1 conserved region
Length = 332
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 308 STPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTF-SHG 472
+TP+N + SS + P T +F S P TGR V P F SHG
Sbjct: 254 TTPYNDDVKKNHESSSMYIVDPATKCTRVFGSGAFPGFTGRIRVDPITGGAFNSHG 309
>At4g18260.1 68417.m02711 cytochrome B561-related related to
cytochrome b-561 (GI:20345443) [Mus musculus]; multidrug
resistance protein, Homo sapiens, PIR2:S71841
Length = 545
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 95 LWTLLPLLFVECLLIFYTLCRDKLV*YLKERV 190
LWT+L + V CL+ FY L +DK + K+RV
Sbjct: 203 LWTILFTVQVTCLVFFY-LYQDKWEHFQKQRV 233
>At5g42030.1 68418.m05117 expressed protein similar to unknown
protein (emb|CAB66408.1)
Length = 279
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 366 APLVVVTLTSSTPNRSHRGPAAVPFHQAQRALSATDKETS-RKRPTALHSDQRSV 527
AP+V + + TPN+ P P ++ L + + +K P AL QR++
Sbjct: 189 APIVHNNINNRTPNKRSNSPMRFPLLRSGSLLKRSSSPSQPKKPPLALPEPQRAI 243
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 436 RSTKRNEHFQPRTRRRAESDQRHFIATNGQSTPKESPEPQIQQETPAAAERAPKADS 606
+ST++N P + S + I T Q T ES EP+++ P+A S
Sbjct: 357 KSTRKNVDNVPSPPKTRSSKKTSDILTTTQPTIAESSEPKVRHVNDDNVSSTPRAHS 413
>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 162
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 526 STPKESPE-PQIQQETPAAAERAPKAD 603
STP+ SP P + +TP+A E AP AD
Sbjct: 78 STPQISPPAPSPEADTPSAPEIAPSAD 104
>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 185
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 526 STPKESPE-PQIQQETPAAAERAPKAD 603
STP+ SP P + +TP+A E AP AD
Sbjct: 78 STPQISPPAPSPEADTPSAPEIAPSAD 104
>At1g80070.1 68414.m09373 splicing factor, putative strong
similarity to splicing factor Prp8 [Homo sapiens]
GI:3661610; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 2382
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 373 WWWSH*HL---RLRTGATEDRPPCRSTKRNEHFQPRTRRRAESDQRH-FIATNGQSTPKE 540
WW + H R+R GAT D+ CR +N R +AE +++H ++ TP+E
Sbjct: 795 WWTNVAHYNRERIRRGATVDKTVCR---KNLGRLTRLWLKAEQERQHNYLKDGPYVTPEE 851
Query: 541 S 543
+
Sbjct: 852 A 852
>At5g54290.1 68418.m06762 cytochrome c biogenesis protein family low
similarity to cytochrome c biogenesis protein CcdA
[Paracoccus pantotrophus] GI:11095328; contains Pfam
profile PF02683: Cytochrome C biogenesis protein
transmembrane region
Length = 354
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 492 AFGSSPC--PWLKVLVALGGTARRPVLGGS 409
A +SPC P L L+ T+R PV+GGS
Sbjct: 261 ALAASPCSTPVLATLLGYVATSRDPVIGGS 290
>At3g52950.1 68416.m05837 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 556
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 511 ATNGQSTPKESPEPQIQQETPAAAERAPK 597
+ NG ++ SP PQ Q + P+ ER K
Sbjct: 37 SVNGNTSKPNSPPPQPQSQAPSNGERTVK 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,063,398
Number of Sequences: 28952
Number of extensions: 313526
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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