Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1251
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.45
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.59
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.78
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 28 1.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.1
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 5.5
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 5.5
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 26 5.5
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 9.6
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 9.6
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.6
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.5 bits (63), Expect = 0.45
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 383 TSA*SSVRPTSTPMSAK-WNAGSASKLSCPRSCSAKNWNGSSTADARGRRRSAPAEDQGD 559
TSA S+ T+TP S+ ++ S+S S P S S + SS + + ++ +
Sbjct: 137 TSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISS 196
Query: 560 GRRETAHRKASRVLAAFCRSTTS 628
+T ++ ++ F STTS
Sbjct: 197 ADAKTVSASSNSTISGFSTSTTS 219
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.59
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 364 LSTEEEDERLKQRPADIDADVREMER-----RKRVEALMSSKLFREELERVLDRRCTRAA 528
L EE ++ L ++ D+D+ + ++ RK EAL SKL + L V+D +
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHE 727
Query: 529 TLRSCRGSRRWSAGD 573
TL + R S D
Sbjct: 728 TLEAQRNDLHSSLSD 742
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.78
Identities = 23/62 (37%), Positives = 25/62 (40%)
Frame = -3
Query: 406 PDAASSARLPPRWTGVRCRSGSSLSPSQPFRQLESIDLSSKTWVSNPVARVFRSHARSSR 227
P + SSA LP + S SSLS S P LSS T S P S SS
Sbjct: 141 PSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSA 200
Query: 226 WP 221
P
Sbjct: 201 AP 202
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +2
Query: 350 TAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTADARGRR 529
T+ P +S SS+ +S+ +A ++ S+S +S S S+ + SST +
Sbjct: 237 TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSS 296
Query: 530 RSAP 541
S+P
Sbjct: 297 SSSP 300
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +2
Query: 515 ARGRRRSAPAEDQGDGRRETA-----HRKASRVLAAFCRSTTSEVLK 640
AR RR++A + G RET HR+ FC+S E+LK
Sbjct: 360 ARTRRQAAMYSNSSSGIRETMYDLKPHRRKDAAEMKFCQSVLKELLK 406
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 383 TSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTADARGRRRSAPA 544
+S +SV PTS+ ++ W++ S S S + + + +TA G S+ A
Sbjct: 939 SSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVA 992
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +1
Query: 373 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREEL 492
EE++E + + D+ D + ME +R+ + +++LF + +
Sbjct: 517 EEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRV 556
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/87 (25%), Positives = 38/87 (43%)
Frame = +2
Query: 323 LRRTQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGS 502
L+ T T P+P S+ P++ P SA + AS L + +A + NGS
Sbjct: 367 LQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAPASA---SPLASTL---KPSTANDTNGS 420
Query: 503 STADARGRRRSAPAEDQGDGRRETAHR 583
S++ + R S+P + + A +
Sbjct: 421 SSSSSSNPRTSSPLASNAENKPPVAQQ 447
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +1
Query: 259 VLPDY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREME 438
V P+Y P + + + G +TD T P G GP T + PA I + +
Sbjct: 298 VPPNYIPNTAMMGPSYSSFG--DTDPRTYPAGMGPNPTAARNGFYPPTPAQIHQLKAQQQ 355
Query: 439 RRKRVEALMS 468
+R MS
Sbjct: 356 HLQRQSKQMS 365
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 364 LSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELER-VLDRRCT 519
L T EE R + +IDA + ER + KL RE+LE VL+ + T
Sbjct: 263 LDTAEETLRSCIQGLNIDAKIVRKERSVGFVPSLGQKLRREQLEEAVLETQAT 315
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/65 (21%), Positives = 35/65 (53%)
Frame = +1
Query: 313 VGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREEL 492
+G + +SE + E +E+L +R + +++E+E+++++EA + +E+
Sbjct: 84 LGKFQQESEREQKSARKVKRAELEEKLAKRR---EQELQELEKQEKIEAEILESRLQEQR 140
Query: 493 ERVLD 507
+ LD
Sbjct: 141 KVALD 145
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 507 VEDPFQFFAEQLRGHESF-DALPAFHFADIGVDVGRTLLQAL 385
V+D FQ E+L G S+ D FHF+DI + G + L
Sbjct: 73 VDDEFQH-TEELAGVSSWSDFFYLFHFSDIPLIFGTLIFTCL 113
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 203 DDHYTQNSHTNLNGDRNRH 147
DDH +Q+ HT+ N + H
Sbjct: 524 DDHVSQHEHTHENSQEHHH 542
>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 420 RCPRNGTPEARRSSHVLEAVPRRIGT 497
RC RNG E R +H +PR + +
Sbjct: 73 RCLRNGRTEVRLYTHYKRHLPRSVNS 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,706
Number of Sequences: 5004
Number of extensions: 53750
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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