Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1251
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12) 43 3e-04
SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27) 38 0.010
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 34 0.12
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058) 33 0.15
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_22151| Best HMM Match : MORN (HMM E-Value=6) 31 0.83
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053) 31 1.1
SB_40000| Best HMM Match : Pox_A32 (HMM E-Value=0.053) 30 1.9
SB_31603| Best HMM Match : DUF1279 (HMM E-Value=0.51) 29 2.5
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1) 29 2.5
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25) 29 3.3
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 29 3.3
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1) 29 4.4
SB_52455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 29 4.4
SB_45968| Best HMM Match : DUF1279 (HMM E-Value=1.2) 28 5.8
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 28 5.8
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 28 5.8
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 5.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16) 28 7.7
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 28 7.7
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 28 7.7
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5) 28 7.7
SB_27665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09) 28 7.7
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) 28 7.7
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 28 7.7
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05) 28 7.7
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 28 7.7
>SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)
Length = 716
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 370 TEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVL-DRRCTRAATLRSCR 546
TE+ +R P I+ DVR ++ R+RV ++ ++FREELE ++ C+ L R
Sbjct: 222 TEKGFDRAISTPDQINRDVRGLKLRQRVSIVLGDEVFREELEEIVGSNSCSPGDPLVLER 281
Query: 547 GSRRWSAGDCTPES 588
RWS+ ES
Sbjct: 282 PPPRWSSNSPYSES 295
>SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)
Length = 468
Score = 37.5 bits (83), Expect = 0.010
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +1
Query: 397 QRPADIDADVREMERRKRVEALMSSKLFREELERVLDRRCTRAATLRSCRGSRRWSAGDC 576
+RP D+ DVR ++ R+RV +++ K+ REELE +++ S G R + D
Sbjct: 28 RRPDDVLRDVRGLKLRQRVSLVLNDKVLREELEDIVENFVHNGPRPAS-EGIRTYQ--DF 84
Query: 577 TPESLKG---PSCVLPINDIRG 633
S G V PI DIRG
Sbjct: 85 LVPSYSGGMAGGMVTPIADIRG 106
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 439 RRKRVEALMSSKLFREELERVLDRRCTRAATLRSCRGSRRWSAGDCTPESLKGPSCVLP 615
+R+ + AL+ S L ++L R++D +R + + + A CTPE + +LP
Sbjct: 9 QRELIRALLDSGLSGDDLVRIVDTEFSRVQDRITAKSATLTQAEPCTPEPTSSENVILP 67
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +2
Query: 332 TQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTA 511
T + AP PR ++ +S TSTP + SA S PR+ S + ST+
Sbjct: 58 TSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTSAPSTSTPRTGSTTTTSAPSTS 117
Query: 512 DARGRRRSAPA 544
AP+
Sbjct: 118 TTSNSTTRAPS 128
>SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058)
Length = 874
Score = 33.5 bits (73), Expect = 0.15
Identities = 36/121 (29%), Positives = 50/121 (41%)
Frame = +2
Query: 284 LA*QINRLELSEWLRRTQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLS 463
LA + L + +WLR QRR+ AP+ PR + S P A W +G+ S
Sbjct: 679 LANSVKNLHVRQWLRSRQRRASRAPN--RPRPDLTL-----DESKPEGA-WRSGTESTER 730
Query: 464 CPRSCSAKNWNGSSTADARGRRRSAPAEDQGDGRRETAHRKASRVLAAFCRSTTSEVLKG 643
R C S RGRRR + + G R H+ A R + RS S + G
Sbjct: 731 RKR-CFVSPLRSS----CRGRRRDSAHKATAGGHRPDGHQGA-RSGDSASRSRVSAAIHG 784
Query: 644 I 646
+
Sbjct: 785 V 785
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1
Query: 367 STEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELER 498
+T+EE ER K + D++ E ER+KR EA + REE ER
Sbjct: 411 TTDEEKERKKSETKNKDSEDEEKERKKR-EAEEEEERRREEEER 453
>SB_22151| Best HMM Match : MORN (HMM E-Value=6)
Length = 186
Score = 31.1 bits (67), Expect = 0.83
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +1
Query: 373 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFRE-ELERVLDRRCTRAATLRSCRG 549
E E R +R +++ REMERR+ +E + RE E R ++RR R+ R G
Sbjct: 36 EMERRREMERRREMERR-REMERRREMERRREMERRREMERRREMERRRERSGVGRWSGG 94
Query: 550 SR-----RWSAGD 573
R RWS G+
Sbjct: 95 ERWSGVERWSGGE 107
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 373 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFRE-ELERVLDRRCTRAATLRSCRG 549
E E R +R +++ REMERR+ +E + RE E R ++RR R G
Sbjct: 30 EMERRREMERRREMERR-REMERRREMERRREMERRREMERRREMERR-REMERRRERSG 87
Query: 550 SRRWSAGD 573
RWS G+
Sbjct: 88 VGRWSGGE 95
>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
Length = 870
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 313 VGMAETD-SETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRV 453
+G+ E + E + T P+ E+EDE + + D DA + ++R+KRV
Sbjct: 822 LGILEVELEEPVVEQTNPIDGEDEDEEILEEQQDEDA--KRVKRKKRV 867
>SB_40000| Best HMM Match : Pox_A32 (HMM E-Value=0.053)
Length = 946
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -3
Query: 460 ELRRASGVPFRGHRRRCRPDAASSARLPPRWTGVRCRSGSSLSPSQPFRQLESIDLSSKT 281
E R + + RG RR AA+ R + + CRSG S S S+ FR + +
Sbjct: 820 EPARCNTLDRRGRRRDSARKAAAGGRTADQGSAA-CRSGDSASRSRTFRHEGPTHICTSV 878
Query: 280 W--VSNPVARVFRSHAR 236
+ V + V + ++ H R
Sbjct: 879 YRIVDDAVEQDYKDHHR 895
>SB_31603| Best HMM Match : DUF1279 (HMM E-Value=0.51)
Length = 161
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 316 GMAETDSETIPNGTGPLSTEEED-ERLKQRPADIDADVREMERRKRVEALMSSKLFREEL 492
G+ TD ETI P S +E ER ++R ++ID E+ER R L + K RE +
Sbjct: 5 GVVATDRETIDGPNTPESRRQEARERNEERLSEID----ELERENR--ELENQKPLRERI 58
Query: 493 ERVLDR 510
+ + +
Sbjct: 59 KAIFKK 64
>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
Length = 762
Score = 29.5 bits (63), Expect = 2.5
Identities = 26/80 (32%), Positives = 35/80 (43%)
Frame = +3
Query: 309 SCRNG*DGLRDDPERHRTPVHRGGRRALEAASGRHRRRCPRNGTPEARRSSHVLEAVPRR 488
S R G L P H +P R A A H R +G+P A ++ HVL VP+R
Sbjct: 502 SYRYGGPTLSPSPGPHMSPAGPFSRTARLA---HHESRPQGSGSPSAIKAHHVL-CVPQR 557
Query: 489 IGTGPRPQMHEGGDAPLLQR 548
++ GDA +L R
Sbjct: 558 WEMEDILKVLNSGDAIILSR 577
>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
Length = 884
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 446 SASKLSCPRSCSAKNWNGSS-TADARGRRRSAPAEDQGDGRRETAHRKASRVLAAFCRST 622
SAS S P S + ++++ TA R +D D + T++R+ +R A CRST
Sbjct: 52 SASDKSRPTSRTQQSYDRKKDTATDIDRNYRLSPDDARDRKAVTSNRQTTRQKEALCRST 111
Query: 623 TSEVLK 640
L+
Sbjct: 112 RDSPLR 117
>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 300
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +2
Query: 110 KCVFLQI*CF-VLSAC-YDRRSN-LCVNFVCSDHLICRYA 220
+CV + I C+ V+ C Y+ S CV+F+ +++CRYA
Sbjct: 157 RCVVMSICCYDVMLLCRYNVTSKYFCVDFLICCYVVCRYA 196
>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 341 RSRTAPDPCPPRRKTSA*SSVRPTSTP 421
R + P P PPRRK S S P +TP
Sbjct: 800 RKHSDPPPLPPRRKKSHEDSPSPCTTP 826
>SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)
Length = 471
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 326 RRTQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSS 505
++++R +R+ P P R ++ P + + + SA K C R +KNW+G
Sbjct: 173 QQSRRTARSPPHPTTDRED----GTLAERHAPQAPR-SVFSAKK--CNRGTLSKNWSGPY 225
Query: 506 TADARGRRR 532
+ D G+RR
Sbjct: 226 SPDRVGKRR 234
>SB_52455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = +1
Query: 310 AVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREE 489
+V ++ ET + G +T ER +RP +D RE+ R A K RE+
Sbjct: 29 SVSSVRSERETPRDRNGRTATRRRPERRDERPRKLDDKPRELLDRDSGRAGSGEK--RED 86
Query: 490 LERVLDRRCTRAATLRSCRGSR 555
R L++ R R SR
Sbjct: 87 KHRRLEKPAQRERNDPRDRDSR 108
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 361 PLSTEEEDERLKQRPADIDADVREMERRKRVEALMS--SKLFREELERVLDRRCTRAATL 534
PL++ E++ ++ D+D V+ E K V+AL+ ++ EL+ ++ RR TRA
Sbjct: 1162 PLASCAENDLCSKQTQDLDKRVKLEE--KEVQALVPPRARTTIRELQNIITRRATRAFVT 1219
Query: 535 R 537
R
Sbjct: 1220 R 1220
>SB_45968| Best HMM Match : DUF1279 (HMM E-Value=1.2)
Length = 180
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +1
Query: 316 GMAETDSETI--PNGTGPL---STEEEDERLKQRPADIDADVREMERRK 447
G+ TD ETI PN + + E +ERL +R +++ + RE+E +K
Sbjct: 23 GVVTTDRETIDDPNTSESRRQEARERNEERLSERIEELERENRELENQK 71
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 310 AVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMER-RKRVEALMSSKLFRE 486
A G+ T S T + + EE+ ERLK+ + RE+++ RK VE E
Sbjct: 1534 AAGVVVTRSVTATLASADVRREEQIERLKE---EFQEKSRELDKMRKEVE---GGGALVE 1587
Query: 487 ELERVLDRRCTRAATLRSCRGSRR 558
L+ +L RC L+ +R
Sbjct: 1588 TLQELLRERCEEVDVLKEKISDKR 1611
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 28.3 bits (60), Expect = 5.8
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Frame = +2
Query: 284 LA*QINRLELSEWLRRTQRRSRTA--PDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASK 457
LA I L + WLR QRR+ A P PP + R + AKWN + +K
Sbjct: 515 LANSIKNLHVRLWLRSRQRRATPARITSPEPPATRP---HPGRVEAGRRLAKWNRTNRAK 571
Query: 458 LSCPRSCSAKNWNGSSTADARGRRRSAPAEDQGDGRRETAHRKA 589
R +A+ + R A+D +AH A
Sbjct: 572 KEALRVAAAQQLPVTPGPSEPQPGRRLRADDAASAGMPSAHTPA 615
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 330 GLRDDPERHRTPVHRGGRRALEAASGRHRRRCPRNGTPEARRSS 461
G RD R +P H RR+ + R RR R+ +P RR S
Sbjct: 205 GYRDQRRRSHSPAHH--RRSRSRSRSRSPRRRRRSRSPRRRRRS 246
>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 384 RALEAASGRHRRRCPRNGTPEARRSSHVLEAVPRRI-GTGPRPQ 512
R LE A +RRR R GT + +HV + R G+ RP+
Sbjct: 980 RLLERAQAANRRRDQRTGTDDTSAPTHVQDLQAREEGGSNHRPE 1023
>SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 514 CTRAATLRSCRGSRRWSAGDCTPESLKGPSCVLPINDI 627
CTR L+ RW AG P+ L P C P +D+
Sbjct: 809 CTRGVALQDLTPDSRWLAG---PDFLAKPPCQWPKSDL 843
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Frame = +3
Query: 369 HRGGRRALEAASGRHRR----------RCPRNGTPEARRSSHVLE 473
H+GG RA + +HRR R PR GTP R ++ E
Sbjct: 873 HKGGNRATQEREKKHRRNQPDKRRTQMRIPRKGTPRKRNQTNPRE 917
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Frame = +3
Query: 345 PERHRTPVHRGGRRALEAASG----RHRRRCPRNGTPEARRSSHVLEAVPRRIGTGPRPQ 512
P R R + RR ++ + R RR+ P P RR S P R P PQ
Sbjct: 895 PRRRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPPMRSSPLPPPQ 954
Query: 513 MHEGGDAPLLQRIKEMV 563
P +R + V
Sbjct: 955 RKRASTPPSPRRARRKV 971
>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
Length = 736
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 370 TEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDRRCTRAATLRSCR 546
T E+ LKQRP + ++ +KR+ F+EE+ + R T ATLRS R
Sbjct: 46 TLEKHVHLKQRPLYNPEETPKLVNKKRI--------FKEEIPFAIVRNDTETATLRSRR 96
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 27.9 bits (59), Expect = 7.7
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Frame = +2
Query: 308 ELSEWLRRTQRRSRTAPDPCPPRRKTS-A*SSVRPTSTPMSAKWNAG---SASKLSCPRS 475
ELSE+ R +RSR P R TS + S VR S W+ S S S RS
Sbjct: 319 ELSEY--RALQRSRQHK---PSSRNTSRSRSPVRSRSPIHPRSWSRSVSHSLSHSSASRS 373
Query: 476 CSAKNWNGSSTADARGRRRSAPAEDQGDGRRETAHRKASRVLAAFCRSTTSE 631
+ ++W+ S T S GD R+ RK + +S T E
Sbjct: 374 PTPEDWDRSRTPSRSPTPDSRSQTSNGDKSRKHRKRKKTHKHKHAKKSKTEE 425
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 326 RRTQR-RSRTAPDPCPPRRKTSA*SSVRPTSTPMSAK 433
RR +R R R +P PC P KT A PTS + AK
Sbjct: 163 RRGRRDRFRRSPGPCTPVVKTPAVPVRAPTSEEVQAK 199
>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
Length = 585
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 452 SKLSCPRSCSAKNWNGSSTADARGRRRSAPAEDQGDGRRETAHRK 586
++ P S + +GS T ++ R RSA D GRR+ H++
Sbjct: 349 AQTQAPHSRRSGQSSGSETEPSKRRSRSAYYSDDDVGRRKRHHKR 393
>SB_27665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 39
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 452 SKLSCPRSCSAKNWNGSSTADARGRRRSAPAE 547
S C R +KNW+G + D G++ SA E
Sbjct: 3 SAKKCNRGTLSKNWSGPYSPDRVGKKASAKLE 34
>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
Length = 1472
Score = 27.9 bits (59), Expect = 7.7
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 1/111 (0%)
Frame = +2
Query: 191 CSDHLICRYAGPSAGPCMTPEDSCYRITNPGLA*QINRLELSEWLRRTQRRSRTAPDPCP 370
C H I +GP P S + N NR S +Q RS++ P+P
Sbjct: 1070 CGTHDITPTPQTGSGPLSMPHPS--QAMNVNTQWSSNRGAYSAPSSPSQPRSQSQPEP-- 1125
Query: 371 PRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWN-GSSTADAR 520
S ++P+ + +WN+ S S S WN GS A R
Sbjct: 1126 ----GSESVGLQPSMDDSAVQWNSKEKSPRSHSSSDQTSGWNSGSQQAPRR 1172
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 346 PNGTGPLSTEEEDERLKQRPADIDADVREMERRKR 450
PNG P+ + RL RPAD+ D E + R
Sbjct: 296 PNGRPPVPRQGPGSRLPPRPADMKPDGEREESKPR 330
>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
Length = 732
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 344 SRTAP-DPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTADAR 520
S TAP PP K SA S++ P S NAG S P S + GSST+ +
Sbjct: 349 SSTAPISSNPPEDKYSALSALDTLFGPSS---NAGGTVSSSMPSSTGGGSVFGSSTSSSS 405
Query: 521 G 523
G
Sbjct: 406 G 406
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 322 AETDSETIPNGTGPLSTEEEDERLKQRP--ADIDADVREMERRKRVEALMSSKLFREELE 495
A++D++ T L E L Q + +D++ EMER++ L+ S+ ELE
Sbjct: 570 ADSDAQKFKKLTKELLALERAYALLQAQVGSTMDSEREEMERQQLQSDLIESQARIHELE 629
Query: 496 RVLD 507
R+LD
Sbjct: 630 RMLD 633
>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 326 RRTQR-RSRTAPDPCPPRRKTSA*SSVRPTSTPMSAK 433
RR +R R R +P PC P KT A PTS + AK
Sbjct: 163 RRGRRDRFRRSPGPCTPVVKTPAVPVRAPTSEEVQAK 199
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 326 RRTQR-RSRTAPDPCPPRRKTSA*SSVRPTSTPMSAK 433
RR +R R R +P PC P KT A PTS + AK
Sbjct: 434 RRGRRDRFRRSPGPCTPVVKTPAVPVRAPTSEEVQAK 470
>SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)
Length = 375
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 370 TEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDRRCTRAATLRSCR 546
T E+ LKQRP + ++ +KR+ F+EE+ + R T ATLRS R
Sbjct: 46 TLEKHVHLKQRPLYNPEETPKLVNKKRI--------FKEEIPFAIVRNDTETATLRSRR 96
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 446 SASKLSCPRSCSAKNWNGSSTADARGRRRSAPAED 550
S SKL+ RS + KNW+G A AP ED
Sbjct: 1345 SVSKLNGVRSSAKKNWSGKPPLRALYELLIAPMED 1379
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,952,141
Number of Sequences: 59808
Number of extensions: 472253
Number of successful extensions: 2232
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2221
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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