Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1251
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.12 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 641 LSIPRMSLIGRTQLGPLRLSGVQSP 567
           L IPR SL+  T +  LRL G ++P
Sbjct: 737 LQIPRASLVSTTSVKSLRLEGDETP 761


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 441 PEARRSSHVLEAVPRRIGTGPRPQMHEGGDAPLLQRI 551
           P+   SS    A P  + + PR +  E  D P+L+R+
Sbjct: 589 PDKPASSSASSA-PTSVCSSPRSEDKEVEDMPVLKRV 624


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 115 ALIVLFIIFTALA*QTPHVQALF 47
           ALI + I+ TAL   T  +  LF
Sbjct: 445 ALITMLIVLTALGLPTNDISLLF 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,109
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)