Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1251
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 36 0.018
At1g49160.2 68414.m05512 protein kinase family protein contains ... 36 0.018
At1g49160.1 68414.m05511 protein kinase family protein contains ... 36 0.018
At3g18750.1 68416.m02380 protein kinase family protein contains ... 31 0.51
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con... 31 0.67
At2g40480.1 68415.m04996 expressed protein contains Pfam profile... 30 1.2
At2g32360.1 68415.m03955 ubiquitin family protein contains INTER... 30 1.2
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 30 1.2
At1g70180.2 68414.m08076 sterile alpha motif (SAM) domain-contai... 30 1.6
At1g70180.1 68414.m08075 sterile alpha motif (SAM) domain-contai... 30 1.6
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co... 29 2.1
At1g68790.1 68414.m07863 expressed protein 29 2.1
At1g27580.1 68414.m03361 F-box family protein similar to F-box p... 29 2.1
At1g27540.1 68414.m03357 F-box family protein similar to F-box p... 29 2.1
At4g35590.1 68417.m05056 RWP-RK domain-containing protein low si... 29 2.7
At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase... 29 2.7
At1g69060.1 68414.m07902 expressed protein 29 3.6
At1g54610.1 68414.m06228 protein kinase family protein contains ... 29 3.6
At5g61560.1 68418.m07725 protein kinase family protein contains ... 28 4.8
At5g15890.1 68418.m01859 expressed protein 28 4.8
At3g21350.1 68416.m02696 RNA polymerase transcriptional regulati... 28 4.8
At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam... 28 4.8
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 4.8
At1g18670.1 68414.m02330 protein kinase family protein contains ... 28 4.8
At3g27350.1 68416.m03420 expressed protein 28 6.3
At3g22520.1 68416.m02846 expressed protein 28 6.3
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 28 6.3
At2g40935.1 68415.m05053 expressed protein low similarity to PGP... 28 6.3
At2g36695.1 68415.m04502 expressed protein 28 6.3
At1g33230.1 68414.m04106 expressed protein 28 6.3
At5g65540.1 68418.m08247 expressed protein 27 8.3
At5g22090.1 68418.m02572 expressed protein 27 8.3
At3g52115.1 68416.m05720 hypothetical protein 27 8.3
At1g27560.1 68414.m03359 F-box family protein-related similar to... 27 8.3
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 36.3 bits (80), Expect = 0.018
Identities = 31/92 (33%), Positives = 33/92 (35%)
Frame = +3
Query: 336 RDDPERHRTPVHRGGRRALEAASGRHRRRCPRNGTPEARRSSHVLEAVPRRIGTGPRPQM 515
R RHR P H GRR A S RRR P +P ARR RR P +
Sbjct: 286 RSPIRRHRRPTHE-GRRQSPAPS--RRRRSP---SPPARRRRSPSPPARRRRSPSPPARR 339
Query: 516 HEGGDAPLLQRIKEMVGGRLHTGKPQGS*LRS 611
H P QR R H P RS
Sbjct: 340 HRSPTPPARQRRSPSPPARRHRSPPPARRRRS 371
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 351 RHRTPVHRGGRRALEAASG--RHRRRCPRNG-TPEARRSSHVLEAVPRRIGTGPRPQMHE 521
R TPV+R RR+ A+ R RRR P + +P RS VL P PR + H+
Sbjct: 584 RSPTPVNRRSRRSSSASRSPDRRRRRSPSSSRSPSRSRSPPVLHRSP-----SPRGRKHQ 638
>At1g49160.2 68414.m05512 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 36.3 bits (80), Expect = 0.018
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +1
Query: 268 DY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMER-- 441
DY PRS ++ V D E G L EEEDERLK+ I+ RE +
Sbjct: 478 DYCPRS--DDEANPTVAATTEDQEA--EKPGSLEEEEEDERLKEELEKIEERFREEMKEI 533
Query: 442 -RKRVEALMSSK--LFREELERV 501
RKR EA M +K F +++++V
Sbjct: 534 TRKREEATMETKNRFFEKKMQQV 556
>At1g49160.1 68414.m05511 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 539
Score = 36.3 bits (80), Expect = 0.018
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +1
Query: 268 DY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMER-- 441
DY PRS ++ V D E G L EEEDERLK+ I+ RE +
Sbjct: 460 DYCPRS--DDEANPTVAATTEDQEA--EKPGSLEEEEEDERLKEELEKIEERFREEMKEI 515
Query: 442 -RKRVEALMSSK--LFREELERV 501
RKR EA M +K F +++++V
Sbjct: 516 TRKREEATMETKNRFFEKKMQQV 538
>At3g18750.1 68416.m02380 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 567
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +1
Query: 316 GMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERR---KRVEALMSSK 474
G ++ + + T P+S EEE ERL+Q +I+A +E + KR EA+M +K
Sbjct: 504 GEDKSSIQEVEEATEPVSLEEE-ERLRQELEEIEAKYQEDMKEIATKREEAIMETK 558
>At1g53470.1 68414.m06061 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 881
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 410 TSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTADARGRRRSAPAEDQGDGRRETAHR 583
T P+S+ +GSAS ++ P + S +N G + + R +P+ GD + +R
Sbjct: 103 TVPPLSSTAVSGSASPVTAPVTASYRNGTGDAIRRRQNRVTLSPSVKDGDSSEDEENR 160
>At2g40480.1 68415.m04996 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 541
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 373 EEEDERLKQRPADIDAD--VREMERRKRVEALMSSKLFREELERVLDRRCTRAA 528
E + +R+++ A+++ D V+E+E +EAL S+K E+L+R L + R +
Sbjct: 116 EFDIKRMEEHAAELEKDLIVKELETLDVLEALGSTKRIVEDLKRQLQQEALRCS 169
>At2g32360.1 68415.m03955 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 175
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 373 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERV 501
EEED+ +K D D V E E K E +K +EE V
Sbjct: 124 EEEDQAMKDEEEDRDVKVEEDEEEKEKEKDGEAKYVKEEAREV 166
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 317 EWLRRTQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWN 496
EW++R+ R + +PD + SS R T +P + N + S PRS + + +
Sbjct: 570 EWVQRSSHRPKKSPDRSSDEPEWVETSSARSTKSPARSSDNLKWVQR-SSPRSTKSPDRS 628
Query: 497 GSSTAD 514
AD
Sbjct: 629 SGRAAD 634
>At1g70180.2 68414.m08076 sterile alpha motif (SAM)
domain-containing protein contains Pfam profile PF00536:
SAM domain (Sterile alpha motif)
Length = 460
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Frame = +2
Query: 326 RRTQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSS 505
R +R +A D PPR S R S P A G S PR+ +
Sbjct: 197 RNGRRMIGSARDRSPPRSDGRIIGSPRDISPPRDAGRRFGPPRDQSPPRNAGRVTGSPRD 256
Query: 506 TADARGR-RRSAPAEDQGDGRRETAHRKASRVLA 604
+ R RR P DQ R + SR L+
Sbjct: 257 RSPPRNAGRRMGPPRDQSPPRSTRSFSSNSRALS 290
>At1g70180.1 68414.m08075 sterile alpha motif (SAM)
domain-containing protein contains Pfam profile PF00536:
SAM domain (Sterile alpha motif)
Length = 456
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Frame = +2
Query: 326 RRTQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSS 505
R +R +A D PPR S R S P A G S PR+ +
Sbjct: 197 RNGRRMIGSARDRSPPRSDGRIIGSPRDISPPRDAGRRFGPPRDQSPPRNAGRVTGSPRD 256
Query: 506 TADARGR-RRSAPAEDQGDGRRETAHRKASRVLA 604
+ R RR P DQ R + SR L+
Sbjct: 257 RSPPRNAGRRMGPPRDQSPPRSTRSFSSNSRALS 290
>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 587
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 319 MAETDSETIPNGTGPLSTEEEDERLKQRPAD 411
MAE D + T P + EEEDE +++P D
Sbjct: 70 MAEGDDDQAEEETNPEAEEEEDEEEEEKPDD 100
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +1
Query: 373 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDRRCTR 522
E+++E +K++ D+DA ++ ++ +++ KL E + D+ C R
Sbjct: 411 EKKEEGVKKKEKDLDARLKTVKEKEKALKAEEKKLHMENERLLEDKECLR 460
>At1g27580.1 68414.m03361 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins;simlar to unknown protein
GB:AAC63676
Length = 364
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 327 DGLRDDPERHRTPVHRGGRRALEAASGRHRRRCPRNGTPEARRSSHVLEAVPRRIGTGPR 506
DG +D E+HR P+ E + +R P N R+ VL +GT
Sbjct: 202 DGFKDVSEKHRLPMWMPSMTMKERERMKQKRSIPSNKGIAVTRAGQVLVVFTYDLGTSES 261
Query: 507 PQM 515
+M
Sbjct: 262 HRM 264
>At1g27540.1 68414.m03357 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins
Length = 413
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 327 DGLRDDPERHRTPVHRGGRRALEAASGRHRRRCPRNGTPEARRSSHVLEAVPRRIGTGPR 506
DG +D E+HR P+ E + +R P N R+ VL +GT
Sbjct: 251 DGFKDVSEKHRLPMWMPSMTMKERERMKQKRSIPSNKGIAVTRAGQVLVVFTYDLGTSES 310
Query: 507 PQM 515
+M
Sbjct: 311 HRM 313
>At4g35590.1 68417.m05056 RWP-RK domain-containing protein low
similarity to minus dominance protein [Chlamydomonas
reinhardtii] GI:1928929; contains Pfam profile: PF02042
RWP-RK domain
Length = 370
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +1
Query: 277 PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVE 456
PR + Q + +ET+SE N S E D K ++ DA ++++KR
Sbjct: 179 PRKLVLKQDLNCLPDSETESEESVNEKTEHSEFEND---KTEQSESDAKTEILKKKKRTP 235
Query: 457 ALMSSKLFREELERVLDRRCTRAA 528
+ ++L EEL + D A+
Sbjct: 236 SRHVAELSLEELSKYFDLTIVEAS 259
>At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase GB:BAA88472
GI:6624205 from (Cucumis sativus); contains Pfam profile
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 459
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 219 PGHLLDRA*LLKTRATGLLTQVLLDKSIDSSCRNG 323
PGH + L K TG++TQV+LD ++ NG
Sbjct: 282 PGHGISIGSLGKDNTTGIVTQVVLDTALLRETTNG 316
>At1g69060.1 68414.m07902 expressed protein
Length = 630
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 373 EEEDERLKQRPADIDADVREMER-RKRVEALMSSKLFREELERVLDRRCTR 522
+EE+ +QR I AD + +R R+++E + ++ R + ERV + R T+
Sbjct: 480 QEEEWESRQRQLQIQADEAQKQRKRRKLENMRKLEMERRQKERVEEVRETQ 530
>At1g54610.1 68414.m06228 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 572
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 512 DARGRRRSAPAEDQGDGRRETAHR-KASRVLAA 607
D RR+ A ++ QGDG R+ HR +++R L A
Sbjct: 429 DEETRRQRAASKAQGDGARKNRHRDRSNRALPA 461
>At5g61560.1 68418.m07725 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 796
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 376 EEDERLKQ---RPADIDADVREMERRKRVEALMSSKLFREELERVLDRRCTRAATLRSCR 546
EE RLK R + D +V EMER ++ +A ++L RE +ER + R A R
Sbjct: 336 EEATRLKNLTIREEEAD-EVVEMERERQEDAENEAELVRECIERETEERLEAEARAEEVR 394
Query: 547 GSRR 558
++
Sbjct: 395 KEKQ 398
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 353 APDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTADARGRRR 532
+P P PP R +SA S P + P+ A N S L+ S S + + +T+ +R R R
Sbjct: 125 SPVPAPPHRNSSADQSPSPVNGPIPAPLNHTSLRHLN---SSSDDHSSPVTTSPSRTRIR 181
>At3g21350.1 68416.m02696 RNA polymerase transcriptional regulation
mediator-related contains weak similarity to RNA
polymerase transcriptional regulation mediator, subunit
6 homolog (Activator-recruited cofactor 33 kDa
component) (ARC33) (NY-REN-28 antigen)
(Swiss-Prot:O75586) [Homo sapiens]
Length = 257
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +1
Query: 313 VGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFRE 486
+ A TD+ + + TE ++E + +PA D++EM KRV+ +++S L+R+
Sbjct: 152 ISKAFTDAASKLETIRQVDTENQNEPAESKPASETVDLKEM---KRVDVILTS-LYRK 205
>At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam
PF03467: Smg-4/UPF3 family; similar to hUPF3B
(GI:12232324) [Homo sapiens]
Length = 482
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/77 (29%), Positives = 31/77 (40%)
Frame = +3
Query: 291 DKSIDSSCRNG*DGLRDDPERHRTPVHRGGRRALEAASGRHRRRCPRNGTPEARRSSHVL 470
D+ + S+ NG R +R V+ G LE S RH R R G + +
Sbjct: 396 DQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSR--RVGGRNRKEEVVIG 453
Query: 471 EAVPRRIGTGPRPQMHE 521
E R G+G P HE
Sbjct: 454 EGKTSRRGSGGGPSSHE 470
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 373 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDRR 513
E E+ + K+R + D + RE ER +R + + + RE + DRR
Sbjct: 139 EREERKDKEREREKDRERREREREEREKERVKERERREREDGERDRR 185
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 491 WNGSSTADARGRRRSAPAEDQGDGRRETAHRKASRVLAAFCRSTTSE 631
++ S DA+ R + + G+GRR T RK +R AF + +E
Sbjct: 433 YSPSKEIDAKHREDTTRKKISGNGRRGTESRKPTRKPPAFAKLAPAE 479
>At3g27350.1 68416.m03420 expressed protein
Length = 274
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +1
Query: 358 GPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDRRCTRAATLR 537
G EEE++++++ D V E E++ R + +FR LE+ + + +L
Sbjct: 152 GDYVKEEEEKKVEEELLKEDWSVGEKEKQHRKSVTKNRPVFRLSLEKTIPPKSLDEISLT 211
Query: 538 SCRGSR 555
R R
Sbjct: 212 EKRSER 217
>At3g22520.1 68416.m02846 expressed protein
Length = 600
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/76 (25%), Positives = 30/76 (39%)
Frame = +2
Query: 404 RPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTADARGRRRSAPAEDQGDGRRETAHR 583
+P TP + + A S PR S K G++T + + P + GRR + +
Sbjct: 241 KPMPTPQT--YEPVEAKPKSTPRGSSNKKKKGATTPATGPQSSTKPKPSRQSGRRTSIQQ 298
Query: 584 KASRVLAAFCRSTTSE 631
+ V F SE
Sbjct: 299 RGGAVDLNFLNEEESE 314
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 404 RPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTADARGRRRSAPAEDQG 556
+P +T + + A ++ + +A+N G TA+ARG + P+ G
Sbjct: 483 KPLTTDIHKERLAAIKKSVTATEAANARNQFGHGTANARGGQAKTPSNPMG 533
>At2g40935.1 68415.m05053 expressed protein low similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 190
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = +2
Query: 143 LSACYDRRSNLCVNFVCSDHLICRYA-----GPSAGPCMT 247
+ AC+D + CV C ++ + A G AGPC+T
Sbjct: 51 ICACFDDMQSCCVGLFCPCYIFGKNAELLGSGTFAGPCLT 90
>At2g36695.1 68415.m04502 expressed protein
Length = 117
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 417 RRCP--RNGTPEAR-RSSHVLEAVPRRIGTGPRPQMHEGGDAP 536
+RCP R G P + R V + PRR G P P G AP
Sbjct: 69 KRCPPLREGVPPSPPRRKGVAPSPPRRKGVAPSPSPMRKGVAP 111
>At1g33230.1 68414.m04106 expressed protein
Length = 347
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 367 STEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDR-RCTRA 525
S+ +E+ L+ R + +D+ +R + + + KLF E+LE L R RC A
Sbjct: 28 SSSQEELSLRNRASVVDSSIRRLHSTLASDKHLDPKLF-EKLEEDLQRARCMLA 80
>At5g65540.1 68418.m08247 expressed protein
Length = 605
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 441 PEARRSSHVLEAVPRRIGTGPRPQMHEGGDAPLLQ 545
P+ + LE + RR T PRP M D PL+Q
Sbjct: 466 PQNFQQQQQLERMRRRPVTSPRPNMDMEKDRPLVQ 500
>At5g22090.1 68418.m02572 expressed protein
Length = 463
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 343 SSLSPSQPFRQLESIDLSSKTWVS 272
S+ S + R+ S DLSSKTWVS
Sbjct: 31 SNTSSAPSLRRTFSADLSSKTWVS 54
>At3g52115.1 68416.m05720 hypothetical protein
Length = 588
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 617 IGRTQLGPLRLSGVQSPADHLLDPLQERS 531
+G+T PLRL+ +Q DHL ++ RS
Sbjct: 101 LGKTASMPLRLTSLQGYIDHLKKKMKSRS 129
>At1g27560.1 68414.m03359 F-box family protein-related similar to
F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 358
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 327 DGLRDDPERHRTPVHRGGRRALEAASGRHRRRC-PRNGTPEARRSSHVLEAVPRRIGTGP 503
DG +D E+HR P+ R ++ R++ +C P N R+ VL +GT
Sbjct: 196 DGFKDVSEKHRLPMWM-PRLTMKERESRNQLKCIPSNKGIAVTRAGQVLLVYTFDLGTSE 254
Query: 504 RPQM 515
+M
Sbjct: 255 SHRM 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,579
Number of Sequences: 28952
Number of extensions: 316735
Number of successful extensions: 1252
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -