Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1249
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.38 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   2.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   4.6  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 136 GTPWSTAATRGAGAWMMLYSAYEPSPT 216
           G  WS AAT  A A    YSA  P P+
Sbjct: 105 GLFWSPAATAAATATEYKYSAAAPGPS 131


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +1

Query: 463 GSVDPPWERAVTPANDLIILTMSWRQRTGDHPKMIELMNFFSPT 594
           G  D PW+R     N  ++   +W     D  K+   + F+  T
Sbjct: 223 GGADTPWQREYENVNSTVV---NWVNAGADPGKLTIGLAFYGHT 263


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/57 (21%), Positives = 20/57 (35%)
 Frame = -1

Query: 491 ARSHGGSTEPARNPWQRRPHRRGPRMPADGPAPPHRRREHRLLYLSHQVSPVTDLVA 321
           A  +  S   +   + + PH          PA PH    H    + +Q  P  + +A
Sbjct: 102 ANGYNHSPHLSHMQFMQLPHPAAAHSALLSPAMPHNLTRHDGSVIKNQGMPTMEAIA 158


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 509 SLAGVTARSHGGSTEPARNPWQR 441
           S AGVTA++      P    WQR
Sbjct: 206 SWAGVTAQNSPLYASPLDGEWQR 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,641
Number of Sequences: 336
Number of extensions: 3020
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)