Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1249
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   2.1  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.1  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    26   5.0  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   6.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   6.5  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   8.7  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.7  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   8.7  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   8.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.7  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    25   8.7  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.7  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -1

Query: 482 HGGSTEPARNPWQRRP---HRRGPR-MPADGPAPPHRRREH 372
           H G T+P   PW+      H R PR +P +G  P H+  +H
Sbjct: 298 HNG-TKPDHKPWKHEEHCHHGRFPRPVPHNGTKPDHKPWKH 337



 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -1

Query: 482 HGGSTEPARNPWQRRP---HRRGPR-MPADGPAPPHRRREH 372
           H G T+P   PW+      H + PR +P +G  P H+  +H
Sbjct: 186 HNG-TKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKH 225


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 464 PARNPWQRRPHRRGPRMPADGPAPPHRRREHRLLYLSHQVSPVTDLVAGFCLSPVSVLER 285
           PA+N  +R         P + P P  +R +  L  L H VSP          +P S++++
Sbjct: 359 PAKNKRRRTGSLETGLYPKESPTPSKKRSKRVLWSLKHIVSPGNREKHSLNSTPESIMKK 418


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 468 RGPTVGTSRHASQRPYYIN 524
           R PT G+  H+  +P+Y+N
Sbjct: 77  RYPTAGSCAHSEAQPFYVN 95


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 473 STEPARNPWQRRPHRRGPRMPADGPAPPHRRREHRLLY 360
           S E   NP +RRP    P  P   PAPP +   H   Y
Sbjct: 309 SDELLINP-KRRPIEVKPAAPVPTPAPPVKTSPHPASY 345


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/55 (30%), Positives = 33/55 (60%)
 Frame = +3

Query: 45   GDSRGYRSAEEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAF 209
            G S G +S  E A+E +     ++  + D ++++V ++ AWGR ++DAV++   F
Sbjct: 895  GFSMG-KSGTEVAKEAS-----DIILMDDNFSSIV-KAIAWGRTVNDAVKKFLQF 942


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 507 RPYYINHELETTHW 548
           RPY+++H   TT W
Sbjct: 303 RPYFVDHNTRTTTW 316


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 180 PSTCPTRRCGRPGCSTCQR 124
           P+  PT+R  + GC TC+R
Sbjct: 23  PTPKPTKRRTKTGCLTCRR 41


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 ERPGLHGEDQATLKHRHWRETKSSYQISYWR 344
           +R  + GE ++T++   ++  KS+Y ++ WR
Sbjct: 5   QRVCIFGEKKSTVRSVTFKAPKSNYDLTSWR 35


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 375 LSAPVGRSGPVSWHAWPATV-GPALP 449
           L +P G + PV+W+A   +V GP  P
Sbjct: 108 LGSPYGSASPVTWNAETHSVYGPEFP 133


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 507 RPYYINHELETTHW 548
           RPY+++H   TT W
Sbjct: 321 RPYFVDHNTRTTTW 334


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 190 YSA-YEPSPTLLTSSPAESKQLNGQVFMART-RRRSSTDTGE 309
           YSA YEPSP LL  S    +Q    V  A T      T TGE
Sbjct: 28  YSASYEPSPELLKQSSRRLEQAGYSVKNAETITNLMRTITGE 69


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 467 EPARNPWQRRPHRRGPRMPADGPAPPHRR-REHRLLYLSHQVSPVTDL 327
           E  R P    P    P MP+  P+  ++  + H +LY + +  P  +L
Sbjct: 191 EENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKLNL 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,456
Number of Sequences: 5004
Number of extensions: 49905
Number of successful extensions: 213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)