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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1249
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.026
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 33   0.24 
SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.97 
SB_53322| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_109| Best HMM Match : Spectrin (HMM E-Value=0.002)                  30   1.3  
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)            30   1.7  
SB_46405| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_11351| Best HMM Match : LRV (HMM E-Value=6)                         29   2.2  
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               29   2.9  
SB_57060| Best HMM Match : W2 (HMM E-Value=2.5)                        29   3.9  
SB_48974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_39482| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_6848| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_15585| Best HMM Match : Collagen (HMM E-Value=2.7e-12)              28   5.1  
SB_20303| Best HMM Match : Trans_reg_C (HMM E-Value=0.38)              28   5.1  
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    28   5.1  
SB_56756| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   28   6.8  
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    28   6.8  
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   28   6.8  
SB_31317| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   27   9.0  
SB_27208| Best HMM Match : ICAT (HMM E-Value=1.8e-09)                  27   9.0  
SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = +3

Query: 78   QARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTNSLDELASRVQAAER 257
            Q+ E   ++  +VA ++ +W+ L  +S+     LDDA+  V  F N  D+  S ++ A++
Sbjct: 3700 QSAEEQDNLDEKVADISRRWDELKSKSNERSSLLDDAISAVAEFQNLRDKFVSWLEEADK 3759


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 452 PWQRRPHRRGPRMPADGPAPPHRRREHR 369
           P QRR + RGP MP D   PP R R  R
Sbjct: 268 PEQRRDNMRGPGMPPDMHGPPDRGRHDR 295


>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +3

Query: 72  EEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTNSLDELASRVQAA 251
           +E  ++    ++ E+A+  +  N L +R D W + LDD +QR +    + D    +VQ +
Sbjct: 720 QETTKQEVGHLKTELAQKEELLNKLSERVDYWNKILDD-LQRKQTEIEAADRKIPQVQTS 778

Query: 252 ERPGL 266
            +  L
Sbjct: 779 AQKTL 783


>SB_53322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 9/35 (25%), Positives = 25/35 (71%)
 Frame = +3

Query: 90  LARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQ 194
           +A +++ ++  ++D+W+ L  RS+ W + +D+A++
Sbjct: 44  VAGNLQHQLEVVSDRWSALCQRSEEWQKQVDEALR 78


>SB_109| Best HMM Match : Spectrin (HMM E-Value=0.002)
          Length = 365

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 9/35 (25%), Positives = 25/35 (71%)
 Frame = +3

Query: 90  LARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQ 194
           +A +++ ++  ++D+W+ L  RS+ W + +D+A++
Sbjct: 44  VAGNLQHQLEVVSDRWSALCQRSEEWQKQVDEALR 78


>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
          Length = 703

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -1

Query: 371 RLLYLSHQVSPVTDLVAGFCLSPVSVLERRLVLAMKTWPFSCLDSAGE 228
           RL  L H+VS +TD+++ F  S V  L+     AM+    SC DS  E
Sbjct: 268 RLEDLCHKVSQLTDIMSSFA-SVVKELKTAYDAAMQQNDLSCSDSENE 314


>SB_46405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -1

Query: 497 VTARSHGGSTEPARNPWQRRPHRRGPRMPADGPAPPHRRREHRLLYLSHQVS 342
           + AR      + A+NP  R+ H +   +       PH R  H L Y S  VS
Sbjct: 24  LAARELDARAKGAKNPRWRQKHGKAGLLSLKHQQTPHSRLHHLLTYFSGNVS 75


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +3

Query: 99   SIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTNSLDELASRVQAAERPGLHGED 278
            ++   +  LAD W+ L D SD   + L +A+Q+ + F  ++ EL + ++  E   L  ED
Sbjct: 1868 TVESRLKDLADLWSLLGDLSDNKAQRLKEAIQK-QTFERNVIELQAWIEEVEN-ALASED 1925


>SB_11351| Best HMM Match : LRV (HMM E-Value=6)
          Length = 194

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 464 PARNPWQRRPHRRGPRMPADGPAPPHR 384
           PA N     PH  GP + ADG  PP R
Sbjct: 136 PAVNQRATDPHATGPHVAADGVTPPAR 162


>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 12   TSDTEPSRDSEGDSRGYRSAEEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAV 191
            +SD E S DS+GDS    S++E+   + R+  R    + D   +   R  +     DDA+
Sbjct: 1424 SSDEEKSGDSDGDSGEDDSSDEEKPAVPRATSRLEESIMDNIVSSTPRPRSQAEKNDDAI 1483

Query: 192  Q 194
            +
Sbjct: 1484 K 1484


>SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/78 (20%), Positives = 40/78 (51%)
 Frame = +3

Query: 60  YRSAEEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTNSLDELASR 239
           Y S+EE+ +    S+ R  + + + W  + + +  W +   +++Q V+ +  +  ++ ++
Sbjct: 342 YSSSEEEKKVYGPSLARLSSAVGEAWTAMQNDAYQWLQVDFNSMQNVK-YIATQGKVGTQ 400

Query: 240 VQAAERPGLHGEDQATLK 293
            +       HG +Q+TLK
Sbjct: 401 ERVKSYNLKHGNEQSTLK 418


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +3

Query: 18   DTEPSRDSEGDSRGYRSAEE---QARELARSIRREVAKLADKWNTLVDRSDAWGR-CLDD 185
            +T PS  SEGD+R  R+  +      +    I++E+ +L  +W T +D S  W    ++D
Sbjct: 882  ETRPSSRSEGDTRDRRTPRQGLAHNEDDKNEIQKEMDELQHRW-TELDESLHWKEDRIED 940

Query: 186  AVQRV 200
             V+++
Sbjct: 941  TVRKL 945


>SB_57060| Best HMM Match : W2 (HMM E-Value=2.5)
          Length = 152

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = +3

Query: 63  RSAEEQARELARSIRREVAKLADKWNTL 146
           R+ + +A++ A S+R+++AK  ++W+ L
Sbjct: 125 RTTKPKAKKSAESVRKQIAKTIERWDDL 152


>SB_48974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = +3

Query: 63  RSAEEQARELARSIRREVAKLADKWNTL 146
           R+ + +A++ A S+R+++AK  ++W+ L
Sbjct: 125 RTTKPKAKKSAESVRKQIAKTIERWDDL 152


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +3

Query: 216 SLDELASRVQAAERPGLHGEDQ---ATLKHRHWRETKSSYQ--ISYWRNLMT*IQESVLS 380
           SL+EL SR++  E  G++G+D    AT    H   +  S++  I   ++L   + E V+ 
Sbjct: 118 SLEELKSRIEILEASGINGQDSLNIATAIPSHLDFSAHSFKDIIEILQDLKCNVAEIVIK 177

Query: 381 AP 386
           AP
Sbjct: 178 AP 179


>SB_39482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = +3

Query: 63  RSAEEQARELARSIRREVAKLADKWNTL 146
           R+ + +A++ A S+R+++AK  ++W+ L
Sbjct: 125 RTTKPKAKKSAESVRKQIAKTIERWDDL 152


>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2147

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +1

Query: 151  TAATRGAGAWMMLYSAYEPSPTLLTSSPAESKQLNGQVFMARTRRRSSTDTGERQNPATR 330
            T+AT+ + +  +     EP  T +TS   E      QV  A    RSS  T   QNP + 
Sbjct: 917  TSATQESPSSQVTSVTQEPPSTQVTSVTQEPPST--QVTSATQESRSSQVTSVTQNPPSS 974

Query: 331  SVTGET 348
             VT  T
Sbjct: 975  QVTSVT 980


>SB_6848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 223 TSSPAESKQLNGQVFMARTRRRSSTDTGERQNPATRSVTGE 345
           T S   +  LNG  + A TR   ST     Q+P  RSVT E
Sbjct: 29  TRSGKSTPALNGSFYDA-TRSERSTPISRSQSPGMRSVTSE 68


>SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 484 PTVGPRNQRGTPGSAGPTVAGHACQLTGPLLPTG 383
           PT GP+   G  G  GPT        TGP  PTG
Sbjct: 26  PT-GPKGDTGATGPTGPTGPKGDTGATGPTGPTG 58



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 484 PTVGPRNQRGTPGSAGPTVAGHACQLTGPLLPTG 383
           PT GP+   G  G  GPT        TGP  PTG
Sbjct: 146 PT-GPKGDTGATGPTGPTGPKGDTGATGPAGPTG 178



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 484 PTVGPRNQRGTPGSAGPTVAGHACQLTGPLLPTG 383
           PT GP   +G  G+ GPT        TGP  PTG
Sbjct: 251 PT-GPTGPKGDTGATGPTGPKGDTGATGPAGPTG 283



 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLPTG 383
           GP   +G  G+ GPT        TGP  PTG
Sbjct: 13  GPTGPKGDTGATGPTGPKGDTGATGPTGPTG 43



 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLPTG 383
           GP   +G  G+ GPT        TGP  PTG
Sbjct: 133 GPTGPKGDTGATGPTGPKGDTGATGPTGPTG 163


>SB_15585| Best HMM Match : Collagen (HMM E-Value=2.7e-12)
          Length = 104

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 484 PTVGPRNQRGTPGSAGPTVAGHACQLTGPLLPTG 383
           PT GP   +G  G+ GPT        TGP  PTG
Sbjct: 32  PT-GPTGPKGDTGATGPTGPKGDTGATGPAGPTG 64


>SB_20303| Best HMM Match : Trans_reg_C (HMM E-Value=0.38)
          Length = 1354

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 216 SLDELASRVQAAERPGLHGEDQATLKHRHWRE 311
           SLD++ S V    +PG+ G+    LK  H++E
Sbjct: 516 SLDDIISDVAIFRKPGVTGKGLYELKEEHYKE 547


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 423 PATVGPALPGVPRWFRGPTVGTSRHASQRPYYINHELETTHWGPSEDD*TNELL 584
           P++ G  LP + R   G      +   +  YYI++ ++T H  P ED   + +L
Sbjct: 110 PSSAGAELPPLER--TGSPTAAEKDILRYYYYIHNGIDTEHVAPMEDSWLDHVL 161


>SB_56756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 6   SDTSDTEPSRDSEGDSRGYRSAEEQARELARSIRREVAKLADKWNTLVDRSDAWGRC 176
           +D S T   R  E   R   S E+Q    +        K+  K N  +DR++ W  C
Sbjct: 38  TDLSITLEKRTREPSERTINSCEKQEHLKSEKAPLPELKIRPKHNESLDRANVWSVC 94


>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/94 (21%), Positives = 37/94 (39%)
 Frame = +3

Query: 60  YRSAEEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTNSLDELASR 239
           Y+ AE+Q +EL  S+  +  +L + WN    + D   +C    V ++ A  +  D L+  
Sbjct: 362 YKKAEQQVQELVESLILKRQRLRELWNIRKQKLD---QCFQFRVFQIDAHKSYPDTLSRE 418

Query: 240 VQAAERPGLHGEDQATLKHRHWRETKSSYQISYW 341
               +   L G     + +            S+W
Sbjct: 419 QGLKDYTLLSGSRSCDISNLEKHNFHEDATPSFW 452


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 481 TVGPRNQRGTPGSAG-PTVAGHACQLTGPLLPTGAE 377
           T GP   RG PG+ G P  AG A    GP  P GAE
Sbjct: 176 TAGPPGVRGQPGAIGSPGDAGRA----GPQGPQGAE 207


>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -1

Query: 554 WSPVRCLQLMVNIIRSLAGVTARSH----GGSTEPARNPWQRRPHRRGPRMPADGPAPPH 387
           WSP   + +   ++ SL G+  R        +  PA N     PH   P + ADG  PP 
Sbjct: 394 WSPSSVIGV-AGLLVSLFGLYTRRRELAAAFTRTPAVNQRATDPHATDPHVAADGVTPPA 452

Query: 386 R 384
           R
Sbjct: 453 R 453


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +3

Query: 387 VGRSGPVSWHAWPATVGPALPGVPR----WFRGPTVGTSRHA 500
           + R GP   HA  A +G   P +PR    W  GP  G SR A
Sbjct: 147 IPRDGPPPTHADLADLGRGYPRLPRLGPVWASGPRRGWSRGA 188


>SB_31317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 276 PRHEDLAVQLLGLCWRARQESW*RLVRAVQHHPSTCPT 163
           P   DLAV+ +G C R   ES   +V   +  P+ CPT
Sbjct: 571 PEGRDLAVRFVGKCPRHGDES--SIVVRDREEPARCPT 606


>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -1

Query: 545 VRCLQLMVNIIRSL--AGVTARSHGGSTEPARNPWQRRPHRRGPRMPADGPAPPHRRREH 372
           + C++L+ + I  +   G    S     E A+N  +       P +   G  PP  RREH
Sbjct: 23  IHCMRLLTSEINRVQSGGTLVMSPMSEDEKAKNGEKGEGSEEDPLVEG-GQRPPRERREH 81

Query: 371 R 369
           R
Sbjct: 82  R 82


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 512  RSLAGVTARSHGGSTEPARNPW 447
            +SLA VTA  HG +T  A +PW
Sbjct: 1056 QSLAKVTATFHGLATHAAASPW 1077


>SB_27208| Best HMM Match : ICAT (HMM E-Value=1.8e-09)
          Length = 569

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 51  SRGYRSAEEQARELARSIRREVAKLADKWNTLVD-RSDAWGRCLDDAVQRVRAFTNSLDE 227
           SRG     +  + L   + R VA+LAD      D   D +     + V++++ F  SLD+
Sbjct: 3   SRGKSETHKLQQNLEEQLDRLVAQLADLEECRADLDDDEYEETKKETVEQLKEFKESLDK 62

Query: 228 L 230
           +
Sbjct: 63  I 63


>SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 464 PARNPWQRRPHRRGPRMPADGPAPPHR 384
           PA N     PH  GP + AD   PP R
Sbjct: 881 PAVNQRATNPHATGPHVAADDVTPPTR 907


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,293,344
Number of Sequences: 59808
Number of extensions: 463629
Number of successful extensions: 2158
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2129
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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