Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1249
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    31   0.85 
AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    29   2.0  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   2.0  
Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC024785-1|AAF60598.2|  466|Caenorhabditis elegans C-type lectin...    28   4.5  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z49967-4|CAA90250.1|  287|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U80451-9|AAB37843.1|  285|Caenorhabditis elegans Collagen protei...    27   7.9  
AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen pro...    25   8.6  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 488 RSHGGSTEPARNPWQRRPHRRGPRMPADGPAPPHRRREHR 369
           RS   +T P R+P +R P RR  R  +   +PP RRR  R
Sbjct: 554 RSRWENTSPIRSP-RRSPLRRDNRDRSRSRSPPRRRRRSR 592


>AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical
           protein Y52E8A.4 protein.
          Length = 433

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -1

Query: 359 LSHQVSPVTDLVAGFCLSPVSVLERRLVLAMKTWPFSCLDSAGELVKRVGEGSYALYSII 180
           +S + + V  +VA FC+    +   R +L +     S L  AG  +  VG+G Y   +I 
Sbjct: 77  ISGKWAMVLGMVAAFCMQAAYMFPNRYILMVT----SALGGAGATLLWVGQGQYITENIS 132

Query: 179 QAPAPRVAAVDQG 141
           +A   +  ++  G
Sbjct: 133 EANREKNTSIQWG 145


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 433  WGRRCQGFLAGSVDPPWERAVTPANDLIILTMSWRQRT-GDHPKMIELMNFFS 588
            +G   + FL  SV  PW+RA++ +N L        ++T  +HP  +E++   S
Sbjct: 3037 FGPTSEHFLNQSVTLPWQRAISKSNLLPYYIEQTSEKTQWEHPVWVEIVKELS 3089


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 433  WGRRCQGFLAGSVDPPWERAVTPANDLIILTMSWRQRT-GDHPKMIELMNFFS 588
            +G   + FL  SV  PW+RA++ +N L        ++T  +HP  +E++   S
Sbjct: 3037 FGPTSEHFLNQSVTLPWQRAISKSNLLPYYIEQTSEKTQWEHPVWVEIVKELS 3089


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
           protein.
          Length = 2427

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 75  EQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQ 194
           +Q   LA  IR ++A+L D W  L  +++     LDD++Q
Sbjct: 869 QQGHFLAPEIRDKLAQLRDNWRILKSKAEKRRTDLDDSLQ 908


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 433  WGRRCQGFLAGSVDPPWERAVTPANDLIILTMSWRQRT-GDHPKMIELMNFFS 588
            +G   + FL  SV  PW+RA++ +N L        ++T  +HP  +E++   S
Sbjct: 3037 FGPTSEHFLNQSVTLPWQRAISKSNLLPYYIEQTSEKTQWEHPVWVEIVKELS 3089


>Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical
           protein W04D2.1b protein.
          Length = 894

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
 Frame = +3

Query: 9   DTSDTEPSRDSEGDSRGYRSAEEQARELARSIRREVAKLADKW------NTLVDRSDAWG 170
           +  ++ P RDS+  +   R   +Q  E  R+I  E A     W        L       G
Sbjct: 612 EVQNSVPRRDSQLQAELKR---QQNNERLRTIFAEKANQVGPWLERELEQVLAIGLGGRG 668

Query: 171 RCLDDAVQRVRAFTNSLDELASRVQAAERPGLHGEDQATLKHRHWRETKSSYQISYWRNL 350
           R L+DA+Q++R+   ++      +   ER     ++    ++R  R +  S ++  W  L
Sbjct: 669 R-LEDAIQQLRSIQRNVLGYKPNLDELERVHQEMQENFVFENRKSRYSMESLRVG-WETL 726

Query: 351 MT*IQESV 374
           +T I +++
Sbjct: 727 LTSINKTI 734


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical protein
            W04D2.1a protein.
          Length = 920

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
 Frame = +3

Query: 9    DTSDTEPSRDSEGDSRGYRSAEEQARELARSIRREVAKLADKW------NTLVDRSDAWG 170
            +  ++ P RDS+  +   R   +Q  E  R+I  E A     W        L       G
Sbjct: 638  EVQNSVPRRDSQLQAELKR---QQNNERLRTIFAEKANQVGPWLERELEQVLAIGLGGRG 694

Query: 171  RCLDDAVQRVRAFTNSLDELASRVQAAERPGLHGEDQATLKHRHWRETKSSYQISYWRNL 350
            R L+DA+Q++R+   ++      +   ER     ++    ++R  R +  S ++  W  L
Sbjct: 695  R-LEDAIQQLRSIQRNVLGYKPNLDELERVHQEMQENFVFENRKSRYSMESLRVG-WETL 752

Query: 351  MT*IQESV 374
            +T I +++
Sbjct: 753  LTSINKTI 760


>AC024785-1|AAF60598.2|  466|Caenorhabditis elegans C-type lectin
           protein 70 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
 Frame = +3

Query: 399 GPVSWHAWPATVGPALPGVPRWFRGPTVGTSRHASQ--RPYYINHELETTHWGPSEDD*T 572
           GP + H W         G   W  G  VG +   SQ     Y    L  T W    DD  
Sbjct: 81  GPAAQHFWIGLSKNGSSGSLTWDNGSPVGYTNLGSQNGNNLYFTESLANTKWNTLGDDKI 140

Query: 573 N 575
           N
Sbjct: 141 N 141


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLP 389
           GP  Q GTPG+AGP   G      GP LP
Sbjct: 248 GPPGQDGTPGNAGPD--GQPGSPGGPGLP 274


>U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical
           protein F08F8.9a protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -1

Query: 512 RSLAGVTARSHGGSTEPARNPWQRR----PHRRGPRMPADGPAPPHRRREHRLLYLSHQV 345
           + L G  AR  G   E   +P   +      R G   PA+GP+   RRR ++ + ++  +
Sbjct: 558 KRLGGELARRQGRVYEEVSSPGPLKRSADQSRAGSIQPAEGPSRKQRRRNNKNVQVTVNM 617

Query: 344 SPVTD 330
             ++D
Sbjct: 618 EDISD 622


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLPTGAESTD 368
           GP    G PG+ G T +G A    GP  P G    D
Sbjct: 181 GPPGAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGND 216


>Z49967-4|CAA90250.1|  287|Caenorhabditis elegans Hypothetical
           protein F54C9.4 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLP 389
           GP+ + GT GS GPT  G    + GP LP
Sbjct: 188 GPQGEPGTEGSEGPT--GQDGTIGGPGLP 214


>U80451-9|AAB37843.1|  285|Caenorhabditis elegans Collagen protein
           73 protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLPTGAESTD 368
           GP  Q G PG  GP     A    GP  P G    D
Sbjct: 156 GPPGQPGAPGEQGPNGRPGAPGAPGPQGPPGTAGND 191


>AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen
           protein 99 protein.
          Length = 627

 Score = 24.6 bits (51), Expect(2) = 8.6
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 457 GTPGSAGPTVAGHACQLTGPLLPTG 383
           G PG  GP    HA Q TG   P G
Sbjct: 261 GPPGPPGPPGVCHASQCTGIQGPPG 285



 Score = 21.0 bits (42), Expect(2) = 8.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 478 VGPRNQRGTPGSAG 437
           +GP+ + G+PG  G
Sbjct: 212 IGPKGETGSPGRDG 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,207,838
Number of Sequences: 27780
Number of extensions: 316882
Number of successful extensions: 1546
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)