BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1249 (608 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 31 0.85 AC024806-2|AAK84613.1| 433|Caenorhabditis elegans Hypothetical ... 30 1.5 Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 2.0 Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 2.0 U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 29 2.0 AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 2.0 Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 28 4.5 Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 28 4.5 AC024785-1|AAF60598.2| 466|Caenorhabditis elegans C-type lectin... 28 4.5 Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 28 6.0 U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 28 6.0 Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 27 7.9 Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical pr... 27 7.9 U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 27 7.9 AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 25 8.6 >AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical protein Y106G6D.7 protein. Length = 948 Score = 30.7 bits (66), Expect = 0.85 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = -1 Query: 488 RSHGGSTEPARNPWQRRPHRRGPRMPADGPAPPHRRREHR 369 RS +T P R+P +R P RR R + +PP RRR R Sbjct: 554 RSRWENTSPIRSP-RRSPLRRDNRDRSRSRSPPRRRRRSR 592 >AC024806-2|AAK84613.1| 433|Caenorhabditis elegans Hypothetical protein Y52E8A.4 protein. Length = 433 Score = 29.9 bits (64), Expect = 1.5 Identities = 19/73 (26%), Positives = 34/73 (46%) Frame = -1 Query: 359 LSHQVSPVTDLVAGFCLSPVSVLERRLVLAMKTWPFSCLDSAGELVKRVGEGSYALYSII 180 +S + + V +VA FC+ + R +L + S L AG + VG+G Y +I Sbjct: 77 ISGKWAMVLGMVAAFCMQAAYMFPNRYILMVT----SALGGAGATLLWVGQGQYITENIS 132 Query: 179 QAPAPRVAAVDQG 141 +A + ++ G Sbjct: 133 EANREKNTSIQWG 145 >Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein F15D3.1a protein. Length = 3674 Score = 29.5 bits (63), Expect = 2.0 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +1 Query: 433 WGRRCQGFLAGSVDPPWERAVTPANDLIILTMSWRQRT-GDHPKMIELMNFFS 588 +G + FL SV PW+RA++ +N L ++T +HP +E++ S Sbjct: 3037 FGPTSEHFLNQSVTLPWQRAISKSNLLPYYIEQTSEKTQWEHPVWVEIVKELS 3089 >Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein F15D3.1a protein. Length = 3674 Score = 29.5 bits (63), Expect = 2.0 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +1 Query: 433 WGRRCQGFLAGSVDPPWERAVTPANDLIILTMSWRQRT-GDHPKMIELMNFFS 588 +G + FL SV PW+RA++ +N L ++T +HP +E++ S Sbjct: 3037 FGPTSEHFLNQSVTLPWQRAISKSNLLPYYIEQTSEKTQWEHPVWVEIVKELS 3089 >U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1 protein. Length = 2427 Score = 29.5 bits (63), Expect = 2.0 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +3 Query: 75 EQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQ 194 +Q LA IR ++A+L D W L +++ LDD++Q Sbjct: 869 QQGHFLAPEIRDKLAQLRDNWRILKSKAEKRRTDLDDSLQ 908 >AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein protein. Length = 3674 Score = 29.5 bits (63), Expect = 2.0 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +1 Query: 433 WGRRCQGFLAGSVDPPWERAVTPANDLIILTMSWRQRT-GDHPKMIELMNFFS 588 +G + FL SV PW+RA++ +N L ++T +HP +E++ S Sbjct: 3037 FGPTSEHFLNQSVTLPWQRAISKSNLLPYYIEQTSEKTQWEHPVWVEIVKELS 3089 >Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical protein W04D2.1b protein. Length = 894 Score = 28.3 bits (60), Expect = 4.5 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Frame = +3 Query: 9 DTSDTEPSRDSEGDSRGYRSAEEQARELARSIRREVAKLADKW------NTLVDRSDAWG 170 + ++ P RDS+ + R +Q E R+I E A W L G Sbjct: 612 EVQNSVPRRDSQLQAELKR---QQNNERLRTIFAEKANQVGPWLERELEQVLAIGLGGRG 668 Query: 171 RCLDDAVQRVRAFTNSLDELASRVQAAERPGLHGEDQATLKHRHWRETKSSYQISYWRNL 350 R L+DA+Q++R+ ++ + ER ++ ++R R + S ++ W L Sbjct: 669 R-LEDAIQQLRSIQRNVLGYKPNLDELERVHQEMQENFVFENRKSRYSMESLRVG-WETL 726 Query: 351 MT*IQESV 374 +T I +++ Sbjct: 727 LTSINKTI 734 >Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical protein W04D2.1a protein. Length = 920 Score = 28.3 bits (60), Expect = 4.5 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Frame = +3 Query: 9 DTSDTEPSRDSEGDSRGYRSAEEQARELARSIRREVAKLADKW------NTLVDRSDAWG 170 + ++ P RDS+ + R +Q E R+I E A W L G Sbjct: 638 EVQNSVPRRDSQLQAELKR---QQNNERLRTIFAEKANQVGPWLERELEQVLAIGLGGRG 694 Query: 171 RCLDDAVQRVRAFTNSLDELASRVQAAERPGLHGEDQATLKHRHWRETKSSYQISYWRNL 350 R L+DA+Q++R+ ++ + ER ++ ++R R + S ++ W L Sbjct: 695 R-LEDAIQQLRSIQRNVLGYKPNLDELERVHQEMQENFVFENRKSRYSMESLRVG-WETL 752 Query: 351 MT*IQESV 374 +T I +++ Sbjct: 753 LTSINKTI 760 >AC024785-1|AAF60598.2| 466|Caenorhabditis elegans C-type lectin protein 70 protein. Length = 466 Score = 28.3 bits (60), Expect = 4.5 Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 2/61 (3%) Frame = +3 Query: 399 GPVSWHAWPATVGPALPGVPRWFRGPTVGTSRHASQ--RPYYINHELETTHWGPSEDD*T 572 GP + H W G W G VG + SQ Y L T W DD Sbjct: 81 GPAAQHFWIGLSKNGSSGSLTWDNGSPVGYTNLGSQNGNNLYFTESLANTKWNTLGDDKI 140 Query: 573 N 575 N Sbjct: 141 N 141 >Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical protein F17C8.2 protein. Length = 296 Score = 27.9 bits (59), Expect = 6.0 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = -2 Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLP 389 GP Q GTPG+AGP G GP LP Sbjct: 248 GPPGQDGTPGNAGPD--GQPGSPGGPGLP 274 >U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical protein F08F8.9a protein. Length = 626 Score = 27.9 bits (59), Expect = 6.0 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = -1 Query: 512 RSLAGVTARSHGGSTEPARNPWQRR----PHRRGPRMPADGPAPPHRRREHRLLYLSHQV 345 + L G AR G E +P + R G PA+GP+ RRR ++ + ++ + Sbjct: 558 KRLGGELARRQGRVYEEVSSPGPLKRSADQSRAGSIQPAEGPSRKQRRRNNKNVQVTVNM 617 Query: 344 SPVTD 330 ++D Sbjct: 618 EDISD 622 >Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical protein T21B4.2 protein. Length = 312 Score = 27.5 bits (58), Expect = 7.9 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -2 Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLPTGAESTD 368 GP G PG+ G T +G A GP P G D Sbjct: 181 GPPGAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGND 216 >Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical protein F54C9.4 protein. Length = 287 Score = 27.5 bits (58), Expect = 7.9 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -2 Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLP 389 GP+ + GT GS GPT G + GP LP Sbjct: 188 GPQGEPGTEGSEGPT--GQDGTIGGPGLP 214 >U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein 73 protein. Length = 285 Score = 27.5 bits (58), Expect = 7.9 Identities = 14/36 (38%), Positives = 14/36 (38%) Frame = -2 Query: 475 GPRNQRGTPGSAGPTVAGHACQLTGPLLPTGAESTD 368 GP Q G PG GP A GP P G D Sbjct: 156 GPPGQPGAPGEQGPNGRPGAPGAPGPQGPPGTAGND 191 >AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen protein 99 protein. Length = 627 Score = 24.6 bits (51), Expect(2) = 8.6 Identities = 12/25 (48%), Positives = 12/25 (48%) Frame = -2 Query: 457 GTPGSAGPTVAGHACQLTGPLLPTG 383 G PG GP HA Q TG P G Sbjct: 261 GPPGPPGPPGVCHASQCTGIQGPPG 285 Score = 21.0 bits (42), Expect(2) = 8.6 Identities = 6/14 (42%), Positives = 10/14 (71%) Frame = -2 Query: 478 VGPRNQRGTPGSAG 437 +GP+ + G+PG G Sbjct: 212 IGPKGETGSPGRDG 225 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,207,838 Number of Sequences: 27780 Number of extensions: 316882 Number of successful extensions: 1546 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1528 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1311096392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -