Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1249
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containi... 30 1.4
At5g06850.1 68418.m00774 C2 domain-containing protein contains I... 30 1.4
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 1.4
At2g37730.1 68415.m04627 fringe-related protein similarity to pr... 30 1.4
At5g41460.1 68418.m05035 fringe-related protein strong similarit... 29 1.8
At2g47210.1 68415.m05896 myb family transcription factor contain... 29 2.4
At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containi... 29 3.2
At1g14960.1 68414.m01787 major latex protein-related / MLP-relat... 29 3.2
At1g01570.1 68414.m00074 fringe-related protein + similar to hyp... 29 3.2
At4g23490.1 68417.m03384 fringe-related protein + weak similari... 28 4.2
At3g09520.1 68416.m01131 exocyst subunit EXO70 family protein co... 28 4.2
At5g20840.1 68418.m02475 phosphoinositide phosphatase family pro... 28 5.6
At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)... 28 5.6
At3g20330.1 68416.m02576 aspartate carabmoyltransferase, chlorop... 28 5.6
At2g27090.1 68415.m03255 expressed protein contains Pfam domains... 28 5.6
At5g04060.1 68418.m00387 dehydration-responsive protein-related ... 27 7.4
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ... 27 7.4
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 27 7.4
At1g22850.1 68414.m02853 expressed protein 27 7.4
At5g42570.1 68418.m05183 expressed protein low similarity to SP|... 27 9.7
At5g35604.1 68418.m04242 hypothetical protein 27 9.7
At4g36210.2 68417.m05152 expressed protein contains Pfam PF05277... 27 9.7
At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277... 27 9.7
At4g15310.1 68417.m02343 cytochrome P450-related contains weak s... 27 9.7
At4g11350.1 68417.m01831 fringe-related protein various hypothet... 27 9.7
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 27 9.7
At2g41790.1 68415.m05165 peptidase M16 family protein / insulina... 27 9.7
At1g36763.1 68414.m04575 hypothetical protein 27 9.7
At1g22600.1 68414.m02822 hypothetical protein 27 9.7
>At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 982
Score = 29.9 bits (64), Expect = 1.4
Identities = 28/78 (35%), Positives = 38/78 (48%)
Frame = -1
Query: 359 LSHQVSPVTDLVAGFCLSPVSVLERRLVLAMKTWPFSCLDSAGELVKRVGEGSYALYSII 180
LS ++ P T A F + R L L +K LDSA E+++RV +GS SI
Sbjct: 22 LSSELFPSTS-AAVFSAASGDHRSRCLSLIVKLGRRGLLDSAREVIRRVIDGS---SSIS 77
Query: 179 QAPAPRVAAVDQGVPLVS 126
+A AVD G+ L S
Sbjct: 78 EAALVADFAVDNGIELDS 95
>At5g06850.1 68418.m00774 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 669
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 377 EHRLLYLSHQVSPVTDLVAGFCLSPVSVLERRL 279
E L + ++V+P D V G +SP+SV E+RL
Sbjct: 154 EQFFLTVENKVTPAKDEVMGRLISPLSVFEKRL 186
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 150 DRSDAWGRCLDD-AVQRVRAFTNSLDELASRVQAAERPGLHGEDQ 281
D ++A R DD VQRV LD+L +R+Q A++ G+ +
Sbjct: 86 DHNEATSRHHDDWKVQRVNTMMTILDDLKTRIQKAQQQSSSGKKE 130
>At2g37730.1 68415.m04627 fringe-related protein similarity to
predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 532
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -1
Query: 236 AGELVKRVGEGSYALYSIIQAPAPRVAAV--DQGVPLVSELGHLAADRAGQLAGLFLSRP 63
A ELVK + +G Y+ + ++ A + GVPL ELG D G GL + P
Sbjct: 252 AVELVKLL-DGCIDRYASLYGSDQKIEACLSEIGVPLTKELGFHQVDIRGNPYGLLAAHP 310
Query: 62 VA 57
VA
Sbjct: 311 VA 312
>At5g41460.1 68418.m05035 fringe-related protein strong similarity
to unknown protein (pir||T13026) similarity to predicted
proteins + similar to hypothetical protein GB:AAC23643
[Arabidopsis thaliana] + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 524
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 143 GVPLVSELGHLAADRAGQLAGLFLSRPVA 57
GVPL ELG D G L GL + PVA
Sbjct: 299 GVPLTKELGFHQYDVYGNLFGLLAAHPVA 327
>At2g47210.1 68415.m05896 myb family transcription factor contains
Pfam profile: PF00249 myb DNA-binding domain
Length = 441
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 461 ARNPWQRRPHRRGPRMPADGPAPPHRR 381
A P ++ R+GP AD P+P H+R
Sbjct: 406 AERPIKKEQKRKGPGRQADTPSPAHKR 432
>At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 862
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 223 TSSPAESKQL----NGQVFMARTRRRSSTDTGERQNPATR 330
TS +E+K L N +F A TR +S+DT NP R
Sbjct: 810 TSEESENKNLVALANSPIFAAGTRASTSSDTNHSGNPTQR 849
>At1g14960.1 68414.m01787 major latex protein-related / MLP-related
low similarity to major latex protein {Papaver
somniferum}[GI:20810] contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 153
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 520 LTMSWRQRTGDHPKMIELMNF 582
+TM W +RT D P+ IE M F
Sbjct: 116 ITMVWEKRTEDSPEPIEFMKF 136
>At1g01570.1 68414.m00074 fringe-related protein + similar to
hypothetical protein GB:AAC23643 [Arabidopsis thaliana]
+ weak similarity to Fringe [Schistocerca
gregaria](GI:6573138);Fringe encodes an extracellular
protein that regulates Notch signalling.
Length = 478
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 191 YSIIQAPAPRVAAV--DQGVPLVSELGHLAADRAGQLAGLFLSRPVA 57
YS + R+ A + GVPL E+G D G+L GL + P+A
Sbjct: 229 YSELYGSDDRIHACMSELGVPLTKEVGFHQIDLYGKLLGLLSAHPLA 275
>At4g23490.1 68417.m03384 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 526
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 143 GVPLVSELGHLAADRAGQLAGLFLSRPVAAGVA 45
GVPL ELG D G L GL + PV V+
Sbjct: 300 GVPLTKELGFHQYDVYGNLFGLLAAHPVTPFVS 332
>At3g09520.1 68416.m01131 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 628
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 210 TNSLDELASRVQAAERPGLHGEDQATLKHRHWRETKSSYQISYWRNLMT*IQES 371
TN+L + SR +++ L GED T R+ SY+ W ++ + E+
Sbjct: 457 TNNLQHVVSRARSSNLKNLLGEDWITRHFAKMRQFAGSYKRLAWGPVVATLPEN 510
>At5g20840.1 68418.m02475 phosphoinositide phosphatase family
protein contains similarity to phosphoinositide
phosphatase SAC1 [Rattus norvegicus]
gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
SacI homology domain; identical to cDNA SAC domain
protein 4 (SAC4) GI:31415724
Length = 831
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 6 SDTSDTEPSRDSEGDSRGYRSAEEQAR 86
S +DT P S+ DSR Y S E+ R
Sbjct: 438 SSDADTSPHNSSDDDSRDYDSLEKNCR 464
>At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P11931 Valyl-tRNA
synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (VALRS)
{Bacillus stearothermophilus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 970
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 181 MMLYSAYE-PSPTLLTSSPAESKQLNGQVFMARTRRR 288
M+L +A+ P+PT SP+ QLN +F R RRR
Sbjct: 1 MILKTAFSLPTPTTTLLSPSSPHQLN-TLFFTRRRRR 36
>At3g20330.1 68416.m02576 aspartate carabmoyltransferase,
chloroplast / aspartate transcarbamylase / ATCase (PYRB)
identical to SP|P49077 Aspartate carbamoyltransferase,
chloroplast precursor (EC 2.1.3.2) (Aspartate
transcarbamylase) (ATCase) {Arabidopsis thaliana}
Length = 390
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 178 WMMLYSAYEPSPTLLTSSPAESKQLNGQVFMARTRRR-SSTDTGERQNPATRSVTG 342
++M YEPS S + K+L G+V R SS GE R+V G
Sbjct: 124 YLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEG 179
>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 743
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/81 (24%), Positives = 32/81 (39%)
Frame = +3
Query: 21 TEPSRDSEGDSRGYRSAEEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRV 200
TE SR S + + EL ++ + +A + +DR AW R L D V+
Sbjct: 388 TESSRSSSSRNPLGGMNSDDVEELNSNLFENICMIAGSHASTLDRLYAWERKLYDEVKGS 447
Query: 201 RAFTNSLDELASRVQAAERPG 263
+ DE ++ E G
Sbjct: 448 QTVRREYDEKCRILRELESEG 468
>At5g04060.1 68418.m00387 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 600
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 174 CLDDAVQRVRAFTNSLDELASRVQAAERPGLHGEDQATLKHRHWRETKSSY 326
C+D + R + ++ D L+S + G+ ED+ TL WRE + Y
Sbjct: 391 CVDISENRQQKPSSLTDRLSSYPTSLREKGI-SEDEFTLDTNFWREQVNQY 440
>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 718
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 271 P*RPGRSAAWTLLASSSRELVKARTRCTASSKHL 170
P RP + +AW L +S E +A R ASS L
Sbjct: 397 PKRPVKISAWKLAKLNSNEATRAAARARASSSVL 430
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor 3
large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Frame = +3
Query: 384 PVGRSGPVSWHAWPATVGPALPGVPRWFR------GPTVGTSRHASQR 509
PVG + P + A A PA P VP+W R GP+ TS +R
Sbjct: 876 PVGTTAPAA--AAAAAGAPAAPYVPKWKRQTTEVSGPSAPTSSETDRR 921
>At1g22850.1 68414.m02853 expressed protein
Length = 344
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 224 VKRVGEGSYALYSIIQAPAPRVAAVDQGVPLVSELGHLAADRAGQLAGLFLSRPVAAGVA 45
++ G YAL+ + A +A +PL G L G + + +S +AA VA
Sbjct: 145 IEGYGTAGYALFIAVYAGLEILAI--PALPLTMSAGLLFGPLIGTII-VSISGTMAASVA 201
Query: 44 FAVSRWFS 21
F ++R+F+
Sbjct: 202 FLIARYFA 209
>At5g42570.1 68418.m05183 expressed protein low similarity to
SP|P51572 B-cell receptor-associated protein 31 (6C6-AG
tumor-associated antigen) (DXS1357E) {Homo sapiens}
Length = 218
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 51 SRGYRSAEEQARELARSIRREVAKLADKWNTLVDRSDAWGRCLDDAVQRVRAFTNSLD 224
+RG+ + + E +++ E+A L K TL S++ G+ L A A D
Sbjct: 128 NRGFEDGKTTSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGETEALRKQAD 185
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = -1
Query: 476 GSTEPARNPWQRRP-----HR--RGPRMPADGPAPPHRRREHRLLYLSHQVSP 339
GS E AR+ + RP HR R PR P+ G + P R + S ++SP
Sbjct: 46 GSAEGARSAYAFRPTLHREHRGGRSPRRPSRGNSSPRRDKARARTDCSPRLSP 98
>At4g36210.2 68417.m05152 expressed protein contains Pfam PF05277:
Protein of unknown function (DUF726)
Length = 516
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 132 KWNTLVDRSDAWGRCLDDAVQR 197
KW+ +DRSD GR L + +Q+
Sbjct: 390 KWSIAIDRSDKAGRLLAEVLQK 411
>At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277:
Protein of unknown function (DUF726)
Length = 672
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 132 KWNTLVDRSDAWGRCLDDAVQR 197
KW+ +DRSD GR L + +Q+
Sbjct: 512 KWSIAIDRSDKAGRLLAEVLQK 533
>At4g15310.1 68417.m02343 cytochrome P450-related contains weak
similarity to Pfam profile: PF00067: Cytochrome P450
Length = 324
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 267 EDLAVQLLGLCWRARQESW 211
E AV+ LGLCW A + SW
Sbjct: 97 ESEAVKELGLCWSAFRTSW 115
>At4g11350.1 68417.m01831 fringe-related protein various
hypothetical proteins from Arabidopsis thaliana strong
similarity to unknown protein (pir||T13026) similarity
to predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 489
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 143 GVPLVSELGHLAADRAGQLAGLFLSRPVAAGVA 45
GVPL E+G D G L GL + P+ V+
Sbjct: 263 GVPLTKEIGFHQYDVHGNLFGLLAAHPITPFVS 295
>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
protein
Length = 477
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 437 PHRRGPRMPADGPAPP 390
PHR P PA PAPP
Sbjct: 403 PHRSQPHPPAPNPAPP 418
>At2g41790.1 68415.m05165 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain; similar to insulin-degrading enzyme
(Insulysin, Insulinase, Insulin protease) [Mouse]
SWISS-PROT:Q9JHR7
Length = 970
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 145 WSTAATRGAGAWMMLYSAYEPSPTLLTSSPAESKQLNGQVF 267
W+T + G G W + YS ++ S L + +++ G +F
Sbjct: 316 WATGLSAGEGEWTLDYSFFKVSIDLTDAGHEHMQEILGLLF 356
>At1g36763.1 68414.m04575 hypothetical protein
Length = 104
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 428 RGPRMPADGPAPPHRRREHRLLY-LSHQVSPVTDLVA--GFCLSPVSVLE 288
R ++ D P RR H+ L HQV P+ DL+ G +SP + L+
Sbjct: 11 RSFKISRDHSTPRSSRRHHQFTSPLDHQVEPLLDLITPPGSRVSPSTPLD 60
>At1g22600.1 68414.m02822 hypothetical protein
Length = 385
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 9 DTSDTEPSRDSEGDSRGYRSAEEQARELARSIRREVAKLADKWNTL 146
DTSD S +S G +RG + E+ E +++ + KL+++ L
Sbjct: 312 DTSDQSQSSESAGRTRGKKKVTEKTDE--DVVKQRLTKLSERMRKL 355
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,985
Number of Sequences: 28952
Number of extensions: 296905
Number of successful extensions: 1159
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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