Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1246
         (563 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5E668 Cluster: Putative uncharacterized protein; n=1; ...    36   0.65 
UniRef50_Q891K4 Cluster: Membrane-associated protein; n=1; Clost...    34   2.6  
UniRef50_Q17388 Cluster: Sperm vesicle fusion protein fer-1; n=3...    33   4.6  

>UniRef50_A5E668 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 1312

 Score = 35.9 bits (79), Expect = 0.65
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = -1

Query: 359 VSRHFSLLT*PTLPNKIDV*RNKSSIIILSFGNNSIK---DCYINILYNISQKYVMYY 195
           +++H +L T  TL   ID  +N+S +I+L+   N  K   D Y NI Y I Q+Y  YY
Sbjct: 222 LAKHGALYTFNTL---IDGLQNESEVIVLAMMKNLTKLAHDYYANIEYKIKQRYKKYY 276


>UniRef50_Q891K4 Cluster: Membrane-associated protein; n=1;
           Clostridium tetani|Rep: Membrane-associated protein -
           Clostridium tetani
          Length = 153

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 563 NHVDGCCHFHHVHNCNSKPVIFSEALLTIERD 468
           +H D CCH HH   CN+   + SE L TIE +
Sbjct: 123 HHHDNCCHHHH-GGCNNFRDVSSEQLRTIEEN 153


>UniRef50_Q17388 Cluster: Sperm vesicle fusion protein fer-1; n=3;
            Caenorhabditis|Rep: Sperm vesicle fusion protein fer-1 -
            Caenorhabditis elegans
          Length = 2034

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 375  LAVLRIVEHEDEENWPLEDKPCKINHKKQSTIPLNSQQSFTK 500
            LA   +   ED++  PLE K CK N+K++S IP   +  F K
Sbjct: 1096 LACFELYSEEDKDLIPLEPK-CKHNYKERSEIPTEFRPQFDK 1136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,177,256
Number of Sequences: 1657284
Number of extensions: 8674807
Number of successful extensions: 17858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17856
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)