Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1246
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.4  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.3  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   9.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -3

Query: 444 SCMVCPQEANSLHLHAPQFSTQQGCHSICLEAFQSSNIT 328
           SC VC  +A  L +   +   ++ C   C     S N T
Sbjct: 773 SCTVCTCDAKYLEIKCKRIYNEKQCCKNCARVDYSMNGT 811


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 245 CYINILYNISQKYVMYYKLMN 183
           C++ +LY I  K+  Y++  N
Sbjct: 8   CFLLLLYYIYSKHYSYWQSKN 28


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 239 INILYNISQKYVMYY 195
           IN+LY ++  Y +YY
Sbjct: 107 INVLYVLTLCYAVYY 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,037
Number of Sequences: 336
Number of extensions: 2408
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)