Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1246
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    26   3.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.4  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.4  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   5.8  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   7.7  

>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 423 EANSLHLHAPQFST-QQGCHSICLEAFQSSNITNTSQ--*DRCLKEQVKH 283
           EA  L  +   +ST  Q C S C++ F SS ++N       +C  + +KH
Sbjct: 17  EAKQLKEYLNMYSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKH 66


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 339  KTEMPRDILSDSLAVLRIVEHEDEENWPLEDKPCKINHKKQS 464
            + ++P   L D +     V  +  ++W LE  PC +    QS
Sbjct: 977  RLDLPAAFLQDLIGASAYVMEQVPDSWFLEKLPCPLTQSLQS 1018


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 420 ANSLHLHAPQFSTQQGCHSICLEAFQSSNITNTSQ*DRCLKEQVKHHNF 274
           ++S HLH  +FS  Q   S C +A +  +I   +      +E +   N+
Sbjct: 137 SHSPHLHHLRFSDWQSLVSYCCQAIEKLSIAEETYVSDSEEEPISQKNY 185


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 485 LTIERDSGLLLVINLAWFVLKRPILFIFML 396
           L I  D  +LLV ++ W+ ++ P  FI M+
Sbjct: 76  LWILADPAILLVQSVYWYFIRAPARFILMV 105


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 417 WPLEDKPCKINHKKQSTIPLNSQQSFTKDDW 509
           W  +D P  I    + +I  N  Q+F  DDW
Sbjct: 339 WDAKDGPAPILFPPKLSIARNLIQAFAYDDW 369


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 411  LHLHAPQFSTQQGCHSICLEAFQSSNI 331
            L++    FST QGC+SI + +  SS I
Sbjct: 1076 LNICQKSFSTAQGCNSIVINSTLSSII 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,898
Number of Sequences: 5004
Number of extensions: 39664
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)