BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1246 (563 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 28 4.5 04_01_0619 - 8125611-8127967,8128449-8130123 28 5.9 06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 27 7.8 >02_03_0314 - 17600970-17600974,17601230-17601357,17601832-17601924, 17602145-17602257,17602520-17602627,17602724-17602828, 17603185-17603355,17603474-17603652,17603741-17603969, 17604841-17604955,17605137-17605312,17606060-17606143, 17606463-17606630,17607011-17607097,17607201-17607323 Length = 627 Score = 28.3 bits (60), Expect = 4.5 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +3 Query: 345 EMPRDILSDSLAVLR--IVEHEDEENWPLED 431 E+P ++ S A+L I H+DE NWPL+D Sbjct: 168 EIPA-LMGVSKAILENVIFVHQDESNWPLQD 197 >04_01_0619 - 8125611-8127967,8128449-8130123 Length = 1343 Score = 27.9 bits (59), Expect = 5.9 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 398 LHNSQHSKAVTQYVSRHFSLLT*PTLPNKIDV*RNKSSIIILSFGNNSI 252 LHN H +T Y LT P LPN D+ N S + L FGNNS+ Sbjct: 177 LHNLTHIDFITNY-------LTGP-LPN--DLFSNNSKLQYLDFGNNSL 215 >06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066, 21260180-21260461,21261084-21261587,21261973-21261981, 21262122-21262196,21262375-21262449,21262557-21263494, 21263577-21263607,21263694-21263979,21264691-21264905, 21265329-21265437,21265556-21265611,21265730-21265822, 21266348-21266393,21266496-21267221,21267489-21267550, 21267738-21268013,21268604-21268735,21268835-21268909 Length = 1394 Score = 27.5 bits (58), Expect = 7.8 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Frame = +3 Query: 420 PLEDKPC----KINHKKQSTIPLNSQQSFTKDDWLAIT 521 P+ D C I + +S++P+ +FT D+WL+IT Sbjct: 584 PVVDPSCLIQTAIRNAIRSSVPIIKSTNFTLDNWLSIT 621 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,045,329 Number of Sequences: 37544 Number of extensions: 213811 Number of successful extensions: 419 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 416 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 419 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1293275844 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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