Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1246
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019...    28   4.5  
04_01_0619 - 8125611-8127967,8128449-8130123                           28   5.9  
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    27   7.8  

>02_03_0314 -
           17600970-17600974,17601230-17601357,17601832-17601924,
           17602145-17602257,17602520-17602627,17602724-17602828,
           17603185-17603355,17603474-17603652,17603741-17603969,
           17604841-17604955,17605137-17605312,17606060-17606143,
           17606463-17606630,17607011-17607097,17607201-17607323
          Length = 627

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 345 EMPRDILSDSLAVLR--IVEHEDEENWPLED 431
           E+P  ++  S A+L   I  H+DE NWPL+D
Sbjct: 168 EIPA-LMGVSKAILENVIFVHQDESNWPLQD 197


>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/49 (42%), Positives = 25/49 (51%)
 Frame = -1

Query: 398 LHNSQHSKAVTQYVSRHFSLLT*PTLPNKIDV*RNKSSIIILSFGNNSI 252
           LHN  H   +T Y       LT P LPN  D+  N S +  L FGNNS+
Sbjct: 177 LHNLTHIDFITNY-------LTGP-LPN--DLFSNNSKLQYLDFGNNSL 215


>06_03_0478 -
           21259376-21259465,21259862-21259924,21260025-21260066,
           21260180-21260461,21261084-21261587,21261973-21261981,
           21262122-21262196,21262375-21262449,21262557-21263494,
           21263577-21263607,21263694-21263979,21264691-21264905,
           21265329-21265437,21265556-21265611,21265730-21265822,
           21266348-21266393,21266496-21267221,21267489-21267550,
           21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +3

Query: 420 PLEDKPC----KINHKKQSTIPLNSQQSFTKDDWLAIT 521
           P+ D  C     I +  +S++P+    +FT D+WL+IT
Sbjct: 584 PVVDPSCLIQTAIRNAIRSSVPIIKSTNFTLDNWLSIT 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,045,329
Number of Sequences: 37544
Number of extensions: 213811
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)