Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1246
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021)                 31   0.49 
SB_59065| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=7.6)           30   1.1  
SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  

>SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021)
          Length = 923

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 366 SDSLAVLRIVEHEDEENWPLEDKPCKINHKKQSTIPLN 479
           SD+   +  VE ED+ N  +E+ P ++NH     IPL+
Sbjct: 714 SDTAIKIENVEFEDDGNVKIEEVPLELNHSLTVNIPLS 751


>SB_59065| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=7.6)
          Length = 247

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 357 DILSDSLAVLRIVEHEDEENWPLEDKPCKINHKKQSTIPLNSQQSFTKDD 506
           D   DSL  L + E  DE+N+  ++K  K   K +     N+ +S TKDD
Sbjct: 185 DFEEDSLPTLEL-EDNDEKNFNKDNKNTKAKKKGKVGKIKNADESITKDD 233


>SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 357 DILSDSLAVLRIVEHEDEENWPLEDKPCKINHKKQSTIPLNSQQSFTKDD 506
           D   DSL  L + E  DE+N+  ++K  K   K +     N+ +S TKDD
Sbjct: 803 DFEEDSLPTLEL-EDNDEKNFNKDNKNTKAKKKGKVGKIKNADESITKDD 851


>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 444 SCMVCPQEANSLHLHAPQFSTQQGCHSICLEAFQSSNITNTSQ*DRCLKEQVK-HHNFII 268
           +C++C +  + L    P    +Q CH  C+  +  +++T  S    C KE  + H   ++
Sbjct: 6   TCIICCEGDDELMELLP--CCKQPCHHPCMWKWIHAHLTPRSTCPHCRKELYRSHQEMVL 63

Query: 267 W 265
           W
Sbjct: 64  W 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,641,000
Number of Sequences: 59808
Number of extensions: 278055
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)