Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1246
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    33   0.14 
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        33   0.14 
Z77663-18|CAC70092.2|  191|Caenorhabditis elegans Hypothetical p...    28   4.0  
Z77654-6|CAB01128.3|  191|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL110501-3|CAB54506.1|  199|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 375  LAVLRIVEHEDEENWPLEDKPCKINHKKQSTIPLNSQQSFTK 500
            LA   +   ED++  PLE K CK N+K++S IP   +  F K
Sbjct: 1096 LACFELYSEEDKDLIPLEPK-CKHNYKERSEIPTEFRPQFDK 1136


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 375  LAVLRIVEHEDEENWPLEDKPCKINHKKQSTIPLNSQQSFTK 500
            LA   +   ED++  PLE K CK N+K++S IP   +  F K
Sbjct: 1096 LACFELYSEEDKDLIPLEPK-CKHNYKERSEIPTEFRPQFDK 1136


>Z77663-18|CAC70092.2|  191|Caenorhabditis elegans Hypothetical
           protein C50B8.5 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 247 SLIELFPNDKIMMLDLFL*TSILLGSVGYV 336
           S + LFP++ + +L L L   ILLG VGY+
Sbjct: 62  SKLTLFPSEWLYLLVLMLIVLILLGLVGYL 91


>Z77654-6|CAB01128.3|  191|Caenorhabditis elegans Hypothetical
           protein C50B8.5 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 247 SLIELFPNDKIMMLDLFL*TSILLGSVGYV 336
           S + LFP++ + +L L L   ILLG VGY+
Sbjct: 62  SKLTLFPSEWLYLLVLMLIVLILLGLVGYL 91


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 560 HVDGCCHFHHVHNCNSKPVIF 498
           H + CC++H+ H+CN+ P ++
Sbjct: 191 HHNNCCNYHN-HSCNACPKVY 210


>AL110501-3|CAB54506.1|  199|Caenorhabditis elegans Hypothetical
           protein Y79H2A.4 protein.
          Length = 199

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 333 C*KTEMPRDILSDSLAVLRIVEHE-DEENWPLEDKPC 440
           C +T+  RD LS ++     V++  +  NW L++KPC
Sbjct: 87  CGQTKKERDALSKAVKRAGAVQYMFNIGNWKLDEKPC 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,588
Number of Sequences: 27780
Number of extensions: 216009
Number of successful extensions: 398
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)