Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1246
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.6  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 556 LTVAAIFTMSIIVIASQSSLVKLC*L----LRGIVDCFL 452
           L +A +FTM IIV    ++LV    +    LR + +CF+
Sbjct: 38  LVLAGLFTMLIIVTIVGNTLVIAAVITTRRLRSVTNCFV 76


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = -3

Query: 360 CLEAFQSSNITNTSQ*DR--CLKEQVKHHNFI 271
           C   + + N  N    D   C  +  KHHNFI
Sbjct: 101 CNNYWNTKNCVNPYDRDSLSCWLQMTKHHNFI 132


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 4/14 (28%), Positives = 12/14 (85%)
 Frame = +3

Query: 396 EHEDEENWPLEDKP 437
           + + +++WP+E++P
Sbjct: 457 QQQQQQHWPMEEEP 470


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 242 YINILYNISQKYVMYYKL 189
           +INIL  + QKYV   KL
Sbjct: 340 FINILKFLKQKYVKNSKL 357


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 431 VLKRPILFIFMLHNSQHSKAVTQYVSRHFSLL 336
           VLK  +L  F+LH S+ ++    Y  +   +L
Sbjct: 5   VLKLLVLLTFLLHPSRCTQGKVNYREKEKEVL 36


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 431 VLKRPILFIFMLHNSQHSKAVTQYVSRHFSLL 336
           VLK  +L  F+LH S+ ++    Y  +   +L
Sbjct: 5   VLKLLVLLTFLLHPSRCTQGKVNYREKEKEVL 36


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 402 EDEENWPLEDKPCKINHKKQSTIPLNSQ 485
           +DE +W LE++  + +  K+S    N Q
Sbjct: 438 DDEAHWELEEESLQGSKIKESNSCSNDQ 465


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 548 CCHFHHVHNCNSKPV 504
           CC  H + + N KP+
Sbjct: 145 CCGVHSLSDYNDKPI 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,204
Number of Sequences: 438
Number of extensions: 2686
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)