Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1246
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    28   3.7  
At1g67390.1 68414.m07670 F-box family protein contains Pfam PF00...    27   6.5  

>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 345 EMPRDILSDSLAVLR--IVEHEDEENWPLED 431
           E+P  ++  S A+L   I  H+DE NWPL+D
Sbjct: 140 EIPA-LMGVSKAILENVIFVHQDESNWPLQD 169


>At1g67390.1 68414.m07670 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 479

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = -1

Query: 560 HVDGCCHFHHVHNCNSKPVIFSEALLTIERDSGLLLVINLAWFVLKRPILFIFMLHNSQH 381
           H+ GC   H  H+C +  +     LLT+E+++  L + N      +R  +  F  +   H
Sbjct: 118 HLMGCSIHHFAHHCVNGVLENWIRLLTLEKNTRFLSLCNKLG-KGRRTNVLRFSPNTFSH 176

Query: 380 SKAVTQYVSRHFSLLT 333
            K  T ++ R + L+T
Sbjct: 177 PKLATLFL-RRYDLVT 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,323,558
Number of Sequences: 28952
Number of extensions: 189734
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)