Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1245
         (293 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    20   6.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    19   8.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   8.4  

>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 19.8 bits (39), Expect = 6.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 224 PLSPVGVISEWPAPIALTNSC 286
           P  PVG   +  AP+ L  SC
Sbjct: 57  PCDPVGRRLKSLAPLVLRGSC 77


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +2

Query: 122 RPIVSRITIHWPSFYN 169
           +P+ +   + +PS+YN
Sbjct: 351 QPVTNLTNLTYPSYYN 366


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 242 VISEWPAPIALTN 280
           V+ +WP+PI  ++
Sbjct: 273 VLPQWPSPIGASH 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,828
Number of Sequences: 336
Number of extensions: 1592
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5216393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)