Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1245
(293 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 26 1.3
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 1.3
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||... 25 1.8
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 3.1
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 24 4.0
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 24 5.3
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 24 5.3
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 5.3
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 24 5.3
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 23 7.1
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 23 7.1
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 23 9.3
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 23 9.3
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 1.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 161 FYNVVTGKTLSLPNLIALQHIPLSPVG 241
F V+GK +L NL L+ PL+ VG
Sbjct: 98 FGKTVSGKVRNLGNLTPLEQTPLASVG 124
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 1.3
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Frame = +2
Query: 95 PRGGARYPIR--PIVSRITIHWPSFYNVVTGKTLSLPNLIALQ-----HIPLSPVGVISE 253
P G +P+ P+ S ++ H + + SL N I+L ++PLSP +
Sbjct: 163 PGGSLVHPLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPAR 222
Query: 254 WPAPIALTNS 283
P+PI L +S
Sbjct: 223 TPSPIRLYSS 232
>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 118
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 176 TGKTLSLPNLIALQHIPLSPVGVISEWPAPIALTNSC 286
T T + + +A + L PV S W P+ +T SC
Sbjct: 40 TACTYLMFHSLATMAVSLHPVYGKSRWTGPLLITGSC 76
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 155 PSFYNVVTGKTLSLPNLIALQHIPLSPVGVISEWPAPIALT 277
PS ++++ L L L HI L+P + +W + I L+
Sbjct: 711 PSLHSILRFLLLLLAFLCFAMHILLTPEATLRKWASSIYLS 751
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 24.2 bits (50), Expect = 4.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 129 IGRIGYRAPPRGGWQHYHLTS 67
+GR+ P G WQ Y L+S
Sbjct: 61 LGRLSISVRPNGSWQVYLLSS 81
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 23.8 bits (49), Expect = 5.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 115 VPGPPSRWVAALP 77
+PGP ++WV LP
Sbjct: 283 IPGPDAQWVTILP 295
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -2
Query: 109 GPPSRW-VAALPFNIREAVSFFI 44
G PS + V LP+++RE ++ F+
Sbjct: 294 GVPSMYGVVTLPYSVREGINIFL 316
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 23.8 bits (49), Expect = 5.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 289 CATVGKGDRCGPFAYYANWRKGDV 218
C V G R GP + Y W+ DV
Sbjct: 395 CLFVRNGARLGPTSIYHAWKAFDV 418
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 23.8 bits (49), Expect = 5.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +2
Query: 110 RYPIRPIVSRITIHWPSFYNVVTGKTLS 193
RY + + + + W Y +TG TL+
Sbjct: 344 RYQLETVYRKTLLEWEDLYKRLTGVTLT 371
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -1
Query: 206 LSWVTTGFSQSRRCKTTASEL*YD 135
L W FS+ RC T + YD
Sbjct: 208 LEWDLNNFSRDTRCLTPVKDFHYD 231
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 163 KRRPVNCNTTHYRANWVPGPPS 98
+ +P N H + VPGPP+
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPA 907
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 23.0 bits (47), Expect = 9.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 21 FSSCLPK*MKKLTASLMLNGNAATHLEGGPGTQFA 125
F LP+ ++ AS LNG AA L P T +A
Sbjct: 103 FEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYA 137
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 23.0 bits (47), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 251 RLLRQLAKGGCAARRLSWVTTGFSQ 177
RLLR L + +R + W+ +G SQ
Sbjct: 601 RLLRTLKRLASDSRNIVWILSGRSQ 625
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,652
Number of Sequences: 5004
Number of extensions: 25104
Number of successful extensions: 55
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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