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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1245
         (293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           31   0.12 
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842...    29   0.86 
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    29   0.86 
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136           28   1.1  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     28   1.1  
06_03_0104 + 16684804-16685838                                         28   1.1  
03_04_0175 - 18092055-18092583,18092819-18093378                       27   2.6  
01_05_0017 - 17199365-17199757,17200040-17200156                       27   2.6  
10_01_0340 - 3734116-3734178,3734212-3734300,3734785-3734844,373...    27   3.5  
04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305           27   3.5  
12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388     26   4.6  
12_01_0943 - 9324181-9325095,9326671-9326853                           26   4.6  
10_08_0923 + 21597593-21597629,21598089-21598135,21598253-215983...    26   4.6  
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    26   4.6  
04_01_0280 - 3757107-3758180                                           26   4.6  
03_02_0423 + 8321076-8322164                                           23   5.5  
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    26   6.1  
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935...    25   8.0  
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560...    25   8.0  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    25   8.0  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 140 ITIHWPSFYNVV-TGKTLSLPNLIALQH 220
           I+  W  F N+V +G TLS+PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>12_02_0947 +
           24680119-24681497,24682213-24682275,24683380-24684239,
           24684399-24684772,24685932-24686112,24686201-24686220
          Length = 958

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +2

Query: 89  HPPRGGARYPIRPIVSRITIH---WPSFYNVVTGKTLSL--PNLIALQHIPLSPVGVISE 253
           HP R   R    P VSR+ +H   WP  Y++   + ++    +++    +P + +G ++ 
Sbjct: 41  HPIRVSLRVADPPAVSRLYVHRPGWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAP 100

Query: 254 WPAPI 268
              P+
Sbjct: 101 GQFPV 105


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
           W  F N+V +G TLSLP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
          Length = 257

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
           W  F N+V +G TLS+P+ + LQH
Sbjct: 17  WSRFTNLVLSGPTLSIPDYVLLQH 40


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
           W  F N+V +G TLSLP  + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437


>06_03_0104 + 16684804-16685838
          Length = 344

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
           W  F N+V +G TLS+P+ + LQH
Sbjct: 145 WSRFTNLVQSGPTLSIPDYVLLQH 168


>03_04_0175 - 18092055-18092583,18092819-18093378
          Length = 362

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
           W  F N+V TG T S+P+ + LQH
Sbjct: 145 WSRFTNLVQTGPTPSIPDYVLLQH 168


>01_05_0017 - 17199365-17199757,17200040-17200156
          Length = 169

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 113 YPIRPIVSRITIHWPSFYNVV-TGKTLSLPNLIALQH 220
           Y IRP +    I+   F N+V +G TLSLP  + LQH
Sbjct: 30  YEIRPEL----INMSRFTNLVQSGPTLSLPEYVLLQH 62


>10_01_0340 -
           3734116-3734178,3734212-3734300,3734785-3734844,
           3736188-3736245,3736507-3736893,3736942-3737615,
           3739154-3739203,3739903-3739943,3740721-3740860,
           3740903-3741183,3741405-3741613
          Length = 683

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
           W  F N++ +G TLSLP  + LQH
Sbjct: 281 WSRFTNLLQSGPTLSLPEYMLLQH 304


>04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305
          Length = 236

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
           W  F N+V +G TLS+P+   LQH
Sbjct: 77  WSRFTNLVQSGPTLSIPDYALLQH 100


>12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388
          Length = 483

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 175 DWENPVVTQLNRLAAHPPFASWRNK 249
           ++E PV    +R+AA PP  SWR+K
Sbjct: 221 EFEGPVFAVTHRVAAAPP--SWRHK 243


>12_01_0943 - 9324181-9325095,9326671-9326853
          Length = 365

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 152 WPSFYNVV-TGKTLSLPNLIALQHIPLS 232
           W  F N+V +G  LSLP  + LQH   S
Sbjct: 198 WSRFTNLVQSGPILSLPEYVFLQHFHTS 225


>10_08_0923 +
           21597593-21597629,21598089-21598135,21598253-21598391,
           21598449-21598562,21599206-21599432,21599578-21599835,
           21600014-21600304,21600766-21600830,21601116-21601299,
           21601857-21601964
          Length = 489

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -3

Query: 225 GMCCKAIKLGNDRVFPVTTL*NDGQ*IVIRLTIGRIGYRAPPRGGWQHYHLTSG 64
           G+    +++  + V+P+         +  R T G + Y++P  G W ++H + G
Sbjct: 336 GVAAGVLRVRVNHVYPLHEAARAHADLEARRTSGSVWYQSPRFGTWNNFHGSHG 389


>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 260 RAIRLLRQLAKGGCAARRL 204
           R + L RQL++GGC  +RL
Sbjct: 94  RGLLLARQLSRGGCGEQRL 112


>04_01_0280 - 3757107-3758180
          Length = 357

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
           W  F N+V +  TLS+P+ + LQH
Sbjct: 145 WSRFTNLVQSSSTLSIPDYVLLQH 168


>03_02_0423 + 8321076-8322164
          Length = 362

 Score = 23.4 bits (48), Expect(2) = 5.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 263 VRAIRLLRQLAKGGCAARRLSW 198
           V A+R LRQ A    AA  LSW
Sbjct: 159 VTAVRWLRQQAAISSAADELSW 180



 Score = 21.0 bits (42), Expect(2) = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 125 GELGTGPPLEVGGSITI 75
           G+LG   PL+V G+I I
Sbjct: 212 GQLGALTPLDVKGAILI 228


>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 173 VTGKTLSLPNLIALQHIPLSPVGVISEWPAP 265
           +TG+T+ +P +IA   I + P    S+ P P
Sbjct: 401 ITGQTIPMPPIIAAPAITVMPPPAPSQQPQP 431


>07_03_1529 +
           27491963-27492465,27493045-27493154,27493384-27493510,
           27494082-27494430,27494975-27495251,27496236-27496333,
           27498090-27498214,27498270-27498326,27498328-27498370,
           27498581-27498667,27498802-27498882,27499735-27499901,
           27499987-27500098,27500188-27500390,27500473-27500607,
           27501106-27501205
          Length = 857

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 161 FYNVVTGKTLSLPNLIALQHIPLSPVGVISEW-PAPIAL 274
           FY V+TG  + +  L++ Q + L  + + ++W P+ +AL
Sbjct: 682 FYGVLTGLLVGIKQLMSEQELNLFVLKIKAKWIPSLVAL 720


>07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,
            5602859-5602935,5603349-5603487,5604306-5604618,
            5605084-5605394,5607245-5609141,5609239-5609374,
            5609519-5609607,5610424-5610507,5611112-5611191,
            5611312-5611446,5612340-5612585
          Length = 1303

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 234  GERGMCCKAIKLGNDRVFPVTTL*NDGQ 151
            GE   C +  K+GND+V  V T  ++G+
Sbjct: 956  GETAKCMQIAKIGNDQVLIVGTSKSNGR 983


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +2

Query: 167 NVVTGKTLSLPNLIALQHI 223
           N +TG+ ++LP++I ++H+
Sbjct: 171 NPITGEQIALPSVITIEHV 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,237,926
Number of Sequences: 37544
Number of extensions: 221238
Number of successful extensions: 488
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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