BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1245 (293 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_02_0036 + 3217163-3217584,3217752-3218322 31 0.12 12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842... 29 0.86 04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 29 0.86 12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 28 1.1 11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371 28 1.1 06_03_0104 + 16684804-16685838 28 1.1 03_04_0175 - 18092055-18092583,18092819-18093378 27 2.6 01_05_0017 - 17199365-17199757,17200040-17200156 27 2.6 10_01_0340 - 3734116-3734178,3734212-3734300,3734785-3734844,373... 27 3.5 04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305 27 3.5 12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388 26 4.6 12_01_0943 - 9324181-9325095,9326671-9326853 26 4.6 10_08_0923 + 21597593-21597629,21598089-21598135,21598253-215983... 26 4.6 05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 26 4.6 04_01_0280 - 3757107-3758180 26 4.6 03_02_0423 + 8321076-8322164 23 5.5 10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 26 6.1 07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 25 8.0 07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 25 8.0 03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110... 25 8.0 >09_02_0036 + 3217163-3217584,3217752-3218322 Length = 330 Score = 31.5 bits (68), Expect = 0.12 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +2 Query: 140 ITIHWPSFYNVV-TGKTLSLPNLIALQH 220 I+ W F N+V +G TLS+PN + LQH Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96 >12_02_0947 + 24680119-24681497,24682213-24682275,24683380-24684239, 24684399-24684772,24685932-24686112,24686201-24686220 Length = 958 Score = 28.7 bits (61), Expect = 0.86 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Frame = +2 Query: 89 HPPRGGARYPIRPIVSRITIH---WPSFYNVVTGKTLSL--PNLIALQHIPLSPVGVISE 253 HP R R P VSR+ +H WP Y++ + ++ +++ +P + +G ++ Sbjct: 41 HPIRVSLRVADPPAVSRLYVHRPGWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAP 100 Query: 254 WPAPI 268 P+ Sbjct: 101 GQFPV 105 >04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902, 4208006-4208297,4209278-4209569,4210013-4210465 Length = 783 Score = 28.7 bits (61), Expect = 0.86 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +2 Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220 W F N+V +G TLSLP + LQH Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156 >12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 Length = 257 Score = 28.3 bits (60), Expect = 1.1 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +2 Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220 W F N+V +G TLS+P+ + LQH Sbjct: 17 WSRFTNLVLSGPTLSIPDYVLLQH 40 >11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371 Length = 680 Score = 28.3 bits (60), Expect = 1.1 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +2 Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220 W F N+V +G TLSLP + LQH Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437 >06_03_0104 + 16684804-16685838 Length = 344 Score = 28.3 bits (60), Expect = 1.1 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +2 Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220 W F N+V +G TLS+P+ + LQH Sbjct: 145 WSRFTNLVQSGPTLSIPDYVLLQH 168 >03_04_0175 - 18092055-18092583,18092819-18093378 Length = 362 Score = 27.1 bits (57), Expect = 2.6 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +2 Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220 W F N+V TG T S+P+ + LQH Sbjct: 145 WSRFTNLVQTGPTPSIPDYVLLQH 168 >01_05_0017 - 17199365-17199757,17200040-17200156 Length = 169 Score = 27.1 bits (57), Expect = 2.6 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +2 Query: 113 YPIRPIVSRITIHWPSFYNVV-TGKTLSLPNLIALQH 220 Y IRP + I+ F N+V +G TLSLP + LQH Sbjct: 30 YEIRPEL----INMSRFTNLVQSGPTLSLPEYVLLQH 62 >10_01_0340 - 3734116-3734178,3734212-3734300,3734785-3734844, 3736188-3736245,3736507-3736893,3736942-3737615, 3739154-3739203,3739903-3739943,3740721-3740860, 3740903-3741183,3741405-3741613 Length = 683 Score = 26.6 bits (56), Expect = 3.5 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +2 Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220 W F N++ +G TLSLP + LQH Sbjct: 281 WSRFTNLLQSGPTLSLPEYMLLQH 304 >04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305 Length = 236 Score = 26.6 bits (56), Expect = 3.5 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +2 Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220 W F N+V +G TLS+P+ LQH Sbjct: 77 WSRFTNLVQSGPTLSIPDYALLQH 100 >12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388 Length = 483 Score = 26.2 bits (55), Expect = 4.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 175 DWENPVVTQLNRLAAHPPFASWRNK 249 ++E PV +R+AA PP SWR+K Sbjct: 221 EFEGPVFAVTHRVAAAPP--SWRHK 243 >12_01_0943 - 9324181-9325095,9326671-9326853 Length = 365 Score = 26.2 bits (55), Expect = 4.6 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 152 WPSFYNVV-TGKTLSLPNLIALQHIPLS 232 W F N+V +G LSLP + LQH S Sbjct: 198 WSRFTNLVQSGPILSLPEYVFLQHFHTS 225 >10_08_0923 + 21597593-21597629,21598089-21598135,21598253-21598391, 21598449-21598562,21599206-21599432,21599578-21599835, 21600014-21600304,21600766-21600830,21601116-21601299, 21601857-21601964 Length = 489 Score = 26.2 bits (55), Expect = 4.6 Identities = 12/54 (22%), Positives = 26/54 (48%) Frame = -3 Query: 225 GMCCKAIKLGNDRVFPVTTL*NDGQ*IVIRLTIGRIGYRAPPRGGWQHYHLTSG 64 G+ +++ + V+P+ + R T G + Y++P G W ++H + G Sbjct: 336 GVAAGVLRVRVNHVYPLHEAARAHADLEARRTSGSVWYQSPRFGTWNNFHGSHG 389 >05_06_0240 - 26629218-26629323,26629412-26629490,26629656-26629761, 26629844-26629947,26630069-26630168,26630256-26630351, 26630464-26630541,26630603-26630671,26630766-26630846, 26630879-26630935,26631016-26631105,26631192-26631278, 26631690-26631794,26631899-26631994,26632222-26632397, 26632847-26633006,26633151-26633600 Length = 679 Score = 26.2 bits (55), Expect = 4.6 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1 Query: 260 RAIRLLRQLAKGGCAARRL 204 R + L RQL++GGC +RL Sbjct: 94 RGLLLARQLSRGGCGEQRL 112 >04_01_0280 - 3757107-3758180 Length = 357 Score = 26.2 bits (55), Expect = 4.6 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +2 Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220 W F N+V + TLS+P+ + LQH Sbjct: 145 WSRFTNLVQSSSTLSIPDYVLLQH 168 >03_02_0423 + 8321076-8322164 Length = 362 Score = 23.4 bits (48), Expect(2) = 5.5 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -1 Query: 263 VRAIRLLRQLAKGGCAARRLSW 198 V A+R LRQ A AA LSW Sbjct: 159 VTAVRWLRQQAAISSAADELSW 180 Score = 21.0 bits (42), Expect(2) = 5.5 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -1 Query: 125 GELGTGPPLEVGGSITI 75 G+LG PL+V G+I I Sbjct: 212 GQLGALTPLDVKGAILI 228 >10_08_0630 - 19410852-19411235,19411370-19412257,19412440-19412941, 19413662-19414135,19414982-19415040,19415468-19415629 Length = 822 Score = 25.8 bits (54), Expect = 6.1 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +2 Query: 173 VTGKTLSLPNLIALQHIPLSPVGVISEWPAP 265 +TG+T+ +P +IA I + P S+ P P Sbjct: 401 ITGQTIPMPPIIAAPAITVMPPPAPSQQPQP 431 >07_03_1529 + 27491963-27492465,27493045-27493154,27493384-27493510, 27494082-27494430,27494975-27495251,27496236-27496333, 27498090-27498214,27498270-27498326,27498328-27498370, 27498581-27498667,27498802-27498882,27499735-27499901, 27499987-27500098,27500188-27500390,27500473-27500607, 27501106-27501205 Length = 857 Score = 25.4 bits (53), Expect = 8.0 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 161 FYNVVTGKTLSLPNLIALQHIPLSPVGVISEW-PAPIAL 274 FY V+TG + + L++ Q + L + + ++W P+ +AL Sbjct: 682 FYGVLTGLLVGIKQLMSEQELNLFVLKIKAKWIPSLVAL 720 >07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196, 5602859-5602935,5603349-5603487,5604306-5604618, 5605084-5605394,5607245-5609141,5609239-5609374, 5609519-5609607,5610424-5610507,5611112-5611191, 5611312-5611446,5612340-5612585 Length = 1303 Score = 25.4 bits (53), Expect = 8.0 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 234 GERGMCCKAIKLGNDRVFPVTTL*NDGQ 151 GE C + K+GND+V V T ++G+ Sbjct: 956 GETAKCMQIAKIGNDQVLIVGTSKSNGR 983 >03_05_0941 + 29008322-29009686,29009929-29010012,29010889-29011052, 29011208-29011233,29011494-29011583,29012135-29012229, 29012328-29012495 Length = 663 Score = 25.4 bits (53), Expect = 8.0 Identities = 7/19 (36%), Positives = 16/19 (84%) Frame = +2 Query: 167 NVVTGKTLSLPNLIALQHI 223 N +TG+ ++LP++I ++H+ Sbjct: 171 NPITGEQIALPSVITIEHV 189 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,237,926 Number of Sequences: 37544 Number of extensions: 221238 Number of successful extensions: 488 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 483 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 488 length of database: 14,793,348 effective HSP length: 70 effective length of database: 12,165,268 effective search space used: 328462236 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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