Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1245
(293 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0036 + 3217163-3217584,3217752-3218322 31 0.12
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842... 29 0.86
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 29 0.86
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 28 1.1
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371 28 1.1
06_03_0104 + 16684804-16685838 28 1.1
03_04_0175 - 18092055-18092583,18092819-18093378 27 2.6
01_05_0017 - 17199365-17199757,17200040-17200156 27 2.6
10_01_0340 - 3734116-3734178,3734212-3734300,3734785-3734844,373... 27 3.5
04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305 27 3.5
12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388 26 4.6
12_01_0943 - 9324181-9325095,9326671-9326853 26 4.6
10_08_0923 + 21597593-21597629,21598089-21598135,21598253-215983... 26 4.6
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 26 4.6
04_01_0280 - 3757107-3758180 26 4.6
03_02_0423 + 8321076-8322164 23 5.5
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 26 6.1
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 25 8.0
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 25 8.0
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110... 25 8.0
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 140 ITIHWPSFYNVV-TGKTLSLPNLIALQH 220
I+ W F N+V +G TLS+PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>12_02_0947 +
24680119-24681497,24682213-24682275,24683380-24684239,
24684399-24684772,24685932-24686112,24686201-24686220
Length = 958
Score = 28.7 bits (61), Expect = 0.86
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +2
Query: 89 HPPRGGARYPIRPIVSRITIH---WPSFYNVVTGKTLSL--PNLIALQHIPLSPVGVISE 253
HP R R P VSR+ +H WP Y++ + ++ +++ +P + +G ++
Sbjct: 41 HPIRVSLRVADPPAVSRLYVHRPGWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAP 100
Query: 254 WPAPI 268
P+
Sbjct: 101 GQFPV 105
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
W F N+V +G TLSLP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
Length = 257
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
W F N+V +G TLS+P+ + LQH
Sbjct: 17 WSRFTNLVLSGPTLSIPDYVLLQH 40
>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
Length = 680
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
W F N+V +G TLSLP + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437
>06_03_0104 + 16684804-16685838
Length = 344
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
W F N+V +G TLS+P+ + LQH
Sbjct: 145 WSRFTNLVQSGPTLSIPDYVLLQH 168
>03_04_0175 - 18092055-18092583,18092819-18093378
Length = 362
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
W F N+V TG T S+P+ + LQH
Sbjct: 145 WSRFTNLVQTGPTPSIPDYVLLQH 168
>01_05_0017 - 17199365-17199757,17200040-17200156
Length = 169
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 113 YPIRPIVSRITIHWPSFYNVV-TGKTLSLPNLIALQH 220
Y IRP + I+ F N+V +G TLSLP + LQH
Sbjct: 30 YEIRPEL----INMSRFTNLVQSGPTLSLPEYVLLQH 62
>10_01_0340 -
3734116-3734178,3734212-3734300,3734785-3734844,
3736188-3736245,3736507-3736893,3736942-3737615,
3739154-3739203,3739903-3739943,3740721-3740860,
3740903-3741183,3741405-3741613
Length = 683
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
W F N++ +G TLSLP + LQH
Sbjct: 281 WSRFTNLLQSGPTLSLPEYMLLQH 304
>04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305
Length = 236
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
W F N+V +G TLS+P+ LQH
Sbjct: 77 WSRFTNLVQSGPTLSIPDYALLQH 100
>12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388
Length = 483
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 175 DWENPVVTQLNRLAAHPPFASWRNK 249
++E PV +R+AA PP SWR+K
Sbjct: 221 EFEGPVFAVTHRVAAAPP--SWRHK 243
>12_01_0943 - 9324181-9325095,9326671-9326853
Length = 365
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 152 WPSFYNVV-TGKTLSLPNLIALQHIPLS 232
W F N+V +G LSLP + LQH S
Sbjct: 198 WSRFTNLVQSGPILSLPEYVFLQHFHTS 225
>10_08_0923 +
21597593-21597629,21598089-21598135,21598253-21598391,
21598449-21598562,21599206-21599432,21599578-21599835,
21600014-21600304,21600766-21600830,21601116-21601299,
21601857-21601964
Length = 489
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = -3
Query: 225 GMCCKAIKLGNDRVFPVTTL*NDGQ*IVIRLTIGRIGYRAPPRGGWQHYHLTSG 64
G+ +++ + V+P+ + R T G + Y++P G W ++H + G
Sbjct: 336 GVAAGVLRVRVNHVYPLHEAARAHADLEARRTSGSVWYQSPRFGTWNNFHGSHG 389
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 260 RAIRLLRQLAKGGCAARRL 204
R + L RQL++GGC +RL
Sbjct: 94 RGLLLARQLSRGGCGEQRL 112
>04_01_0280 - 3757107-3758180
Length = 357
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 152 WPSFYNVV-TGKTLSLPNLIALQH 220
W F N+V + TLS+P+ + LQH
Sbjct: 145 WSRFTNLVQSSSTLSIPDYVLLQH 168
>03_02_0423 + 8321076-8322164
Length = 362
Score = 23.4 bits (48), Expect(2) = 5.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 263 VRAIRLLRQLAKGGCAARRLSW 198
V A+R LRQ A AA LSW
Sbjct: 159 VTAVRWLRQQAAISSAADELSW 180
Score = 21.0 bits (42), Expect(2) = 5.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 125 GELGTGPPLEVGGSITI 75
G+LG PL+V G+I I
Sbjct: 212 GQLGALTPLDVKGAILI 228
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 173 VTGKTLSLPNLIALQHIPLSPVGVISEWPAP 265
+TG+T+ +P +IA I + P S+ P P
Sbjct: 401 ITGQTIPMPPIIAAPAITVMPPPAPSQQPQP 431
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 161 FYNVVTGKTLSLPNLIALQHIPLSPVGVISEW-PAPIAL 274
FY V+TG + + L++ Q + L + + ++W P+ +AL
Sbjct: 682 FYGVLTGLLVGIKQLMSEQELNLFVLKIKAKWIPSLVAL 720
>07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 234 GERGMCCKAIKLGNDRVFPVTTL*NDGQ 151
GE C + K+GND+V V T ++G+
Sbjct: 956 GETAKCMQIAKIGNDQVLIVGTSKSNGR 983
>03_05_0941 +
29008322-29009686,29009929-29010012,29010889-29011052,
29011208-29011233,29011494-29011583,29012135-29012229,
29012328-29012495
Length = 663
Score = 25.4 bits (53), Expect = 8.0
Identities = 7/19 (36%), Positives = 16/19 (84%)
Frame = +2
Query: 167 NVVTGKTLSLPNLIALQHI 223
N +TG+ ++LP++I ++H+
Sbjct: 171 NPITGEQIALPSVITIEHV 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,237,926
Number of Sequences: 37544
Number of extensions: 221238
Number of successful extensions: 488
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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